Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0404 ATGACAAGCCCTGGTCCCAGCTCCAGAATACAGAGTGGTGCTGTCACCCCTCTTCATCCACGAGCTGGAGCAGCTGCTGCAGAGTCTCCTACCAACCGGCCTGATGATGGAAAGCAACAAAGCCACCGATTGCCCCTTCCACTGATAACAATTTCTAATTCTTGCCCTTTTTCTCCTACATATTCGACATCAACAACTCCCTCAGTACCACAAAGTCCTGGTAGGGCGGAAAACCCAATTAGCCCTGGATTACGCTGGAAGAAGGGTTGGCTCTTAGGGAGAGGCGCATTTGGGCATGTATATCTTGGGTTTAATAGTGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAGAAATTTCGCTCCTCAGTCGCTTAAGTCATCCAAATGTAGTGCAATACTATGGATCTGAGACAGTGGATGACAAACTCTACATATATTCGGAATATGTATATGGTGGTTCCATATATAAACTTCTTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGGTAA 633 0.4487 MTSPGPSSRIQSGAVTPLHPRAGAAAAESPTNRPDDGKQQSHRLPLPLITISNSCPFSPTYSTSTTPSVPQSPGRAENPISPGLRWKKGWLLGRGAFGHVYLGFNSESGEMCAMKEVTLFSDDAKSKESAQQLGQEISLLSRLSHPNVVQYYGSETVDDKLYIYSEYVYGGSIYKLLQEYGQFGEIAIHSYTQQILSGLAYLHAKNTVHG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0404 210 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 9 209 - -
Vvi2g0404 210 Pfam Protein kinase domain 90 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0404 210 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Vvi2g0404 210 SUPERFAMILY Protein kinase-like (PK-like) 85 209 IPR011009 -
Vvi2g0404 210 SMART serkin_6 86 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0404 210 Gene3D Transferase(Phosphotransferase) domain 1 85 210 - -
Vvi2g0404 210 MobiDBLite consensus disorder prediction 1 41 - -
Vvi2g0404 210 MobiDBLite consensus disorder prediction 59 75 - -
Vvi2g0404 210 MobiDBLite consensus disorder prediction 59 80 - -
Vvi2g0404 210 ProSiteProfiles Protein kinase domain profile. 86 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0404 Vvi-Chr2 3382948 3384436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0404 1 209 MAP Kinase Kinase Kinase AT1G63700 82.297 5.60e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi2g0404 Pkinase 8.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0404 K20717 - vvi:104881672 410.609