Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0397 ATGAACCCACGGGGTCGGTATCCGCCGGGGATCGGCAACGGCCGGGGCGGAAATTTTCACTCAAACCCTAATTTTCAAAACCGAAACCCTAATTACCAACAACAACAGTATTTTCAGAGACCACCGATGCAGAATCAGCAGCAACAGCAGTGGCTGAGACGGATTCCAATTGCTACTGATTCGCCTGCGAATGAAGTTGAGAAGACAGTACAGTCCGAAGTCGTTGATTCGAGTTCCCAAGATTGGAAGGCACAGCTAAGGGTTCCTCCACCTGATACTCGCTACAAGACAGAGGATGTAACTGCTACAAAAGGAAATGAGTTTGAAGACTATTTTCTGAAACGGGAACTACTCATGGGGATATATGAAAAGGGATTTGAAAGACCTTCTCCCATCCAGGAAGAAAGTATTCCGATTGCTTTAACTGGAAGTGATATTCTTGCTAGAGCTAAAAATGGAACTGGGAAAACAGCTGCCTTTTGCATTCCTGCATTGGAAAAAATTGATCCAGATAATAATGTAATTCAAGTTGTTATACTTGTTCCAACAAGAGAGCTTGCTCTTCAGACATCACAAGTGTGCAAGGAACTTGGGAAGCATTTGAAGATTGAAGTCATGGTCACCACAGGAGGAACTAGTTTGAAGGATGACATCATGCGTTTGTATCAGCCTGTACATTTGTTGGTTGGAACTCCTGGAAGAATTCTGGATCTCTCTAAAAAAGGAATATGCATTTTGAAGGATTGTTCCGTGCTTGTTATGGATGAGGCTGATAAGCTGTTGTCTCCAGAGTTTCAACCTTCAGTGGAGCAACTGATTCGTTTTCTTCCTCAGAATCGGCAAATTTTAATGTTTTCAGCGACATTTCCTGTGACTGTCAAGGATTTTAAAGATAGATATCTGAAAAAGCCTTACGTTATTAATCTCATGGATGAGCTTACTCTCAAGGGTATCACTCAATATTATGCTTTTGTGGAAGAAAGACAGAAGGTTCACTGCCTAAACACTCTTTTCTCTAAGCTTCAAATCAATCAGTCGATAATTTTCTGCAACTCTGTCAATCGGGTTGAACTGTTGGCCAAAAAAATTACAGAGCTTGGTTATTCGTGCTTCTATATTCATGCTAAGATGCTGCAAGATCATCGAAACAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGGAATCTGGTCTGCACTGATTTGTTTACAAGGGGGATAGACATTCAGGCAGTCAACGTTGTCATCAATTTTGATTTTCCCAAGAACTCTGAAACATATCTGCACAGGGTGGGTCGTTCTGGAAGGTTTGGACACCTTGGCCTGGCAGTTAATTTAATAACTTATGAAGACCGTTTCAACTTGTATAGGATCGAGCAGGAACTTGGGGCTGAAATAAAACAAATTCCTCCACACATAGATCAGGCTATTTACTGCAGGTGA 1443 0.4172 MNPRGRYPPGIGNGRGGNFHSNPNFQNRNPNYQQQQYFQRPPMQNQQQQQWLRRIPIATDSPANEVEKTVQSEVVDSSSQDWKAQLRVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPDNNVIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQILMFSATFPVTVKDFKDRYLKKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGAEIKQIPPHIDQAIYCR* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0397 480 Gene3D - 311 480 IPR027417 -
Vvi2g0397 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 460 IPR027417 -
Vvi2g0397 480 CDD SF2_C_DEAD 318 447 - -
Vvi2g0397 480 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 253 261 IPR000629 -
Vvi2g0397 480 CDD DEADc_DDX6 108 308 - -
Vvi2g0397 480 Pfam Helicase conserved C-terminal domain 332 438 IPR001650 -
Vvi2g0397 480 MobiDBLite consensus disorder prediction 64 84 - -
Vvi2g0397 480 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 134 IPR014014 GO:0003724
Vvi2g0397 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 307 IPR014001 -
Vvi2g0397 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 479 - -
Vvi2g0397 480 Gene3D - 63 310 IPR027417 -
Vvi2g0397 480 SMART ultradead3 125 321 IPR014001 -
Vvi2g0397 480 Pfam DEAD/DEAH box helicase 131 295 IPR011545 GO:0003676|GO:0005524
Vvi2g0397 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 477 IPR001650 -
Vvi2g0397 480 MobiDBLite consensus disorder prediction 64 95 - -
Vvi2g0397 480 FunFam ATP-dependent RNA helicase DDX6 87 310 - -
Vvi2g0397 480 FunFam ATP-dependent RNA helicase DDX6 311 480 - -
Vvi2g0397 480 SMART helicmild6 357 438 IPR001650 -
Vvi2g0397 480 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0397 Vvi-Chr2 3284195 3292998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0397 108 477 Eukaryotic Initiation Factors Gene Family AT3G19760 37.634 3.49e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0397 K12614 - vvi:100241111 902.123