Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0395 ATGAGACAAGCAGGGACGTATTCAGGAATATTGAATGGTGGGATGTCAGGGAGAACCGGGCCACACTTGTTGCCCTTGGCCAGGATCAAGAAGATCATGAAGAGGTCTGGCGAGGATGTGAAGATGATATCTGGGGAGGCTCCGATTATTTTCTCAAAAGCCTGTGAGCTGTTCATAGAGGAGTTAACTCAGAGGTCGTGGAAGGTGACACTGCAGGGAAAGAGGAGGACACTTCACAAGGAAGATGTTGCCTCTGCGGTTATTGCTACTGATGTCTTTGATTTTCTTGTCAACGTGGTGTCTAAGTCTGGTGCTAACTCTGAGGATACTCCTGTTGTGATGGAGAGATGA 351 0.4786 MRQAGTYSGILNGGMSGRTGPHLLPLARIKKIMKRSGEDVKMISGEAPIIFSKACELFIEELTQRSWKVTLQGKRRTLHKEDVASAVIATDVFDFLVNVVSKSGANSEDTPVVMER* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0395 116 Gene3D Histone, subunit A 12 102 IPR009072 GO:0046982
Vvi2g0395 116 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Vvi2g0395 116 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
Vvi2g0395 116 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 103 - -
Vvi2g0395 116 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0395 Vvi-Chr2 3263715 3264065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0395 22 108 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.920 2.02e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi2g0395 CBFD_NFYB_HMF 1.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0395 - - vvi:100266714 229.18