Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0389 ATGAGAAGTTCTAGTTCACTTCAGCTTCTGTGGGTTGTTTTTGGAGTTCTTTTTGCGAGTTGTGATGCCTTTGCATCAAATGAGGTCTCAGCTCTTAATACCTTAAAGGAAGGCATATATGAAGACCCACTTACGGTTCTGTCCACTTGGAACACCGTTGATTCAGATCCTTGTGATTGGTCTGGCATTACGTGCTCTGAAGCTCGAGATCATGTTATAAAAATAAATATTTCTGGGTCATCATTGAAGGGATTTCTCACACCAGAATTGGGTCAACTCTCTTCCTTGCAAGAACTAATTTTGCATGGGAACAACCTGATTGGGGTAATACCTAAAGAAATTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATAAACCTCGAGTCCAATGGGTTGAGTGGACGCCTGCCTCCTGAGCTTGGCAACTTGAGACACCTCGAGGAGCTTCGGCTGGATAGGAACAGGCTTGAAGGAACTGTTCCTGGCAGTAACACTTCGAATTTTGTATCTGACGTTAATGGGATGTATGCCTCAAGCAGGAACATCACTGGCCTCTGTCGCTCATCTCAGTTTAAAGTTGCAGATTTCTCATACAACTTTTTTGTTGGAAGCATACCTAAGTGCTTGTCATATCTGCCAAGAACAAGTTTTCAAGGGAACTGCCTTCAAGACACAGCTCCCAGACAACGGTCTACAGTGCAATGTGCTGTTCCTCCACCTGCCAAAAGCCATCCAGGAGTCGGCCCAAAGCACCAGCCTACCTTAGATGGACCGAAGCATCAGGACACATCAAAACCTGCCTGGCTTTTAGCTCTGGAAATAGTGACAGGAACCATGGTTGGCTCTCTCTGTATCATTGCTCTTCTCACTGCTCTTCAGAGATGCAAAAGCAAATCTTCTATCATAATCCCTTGGAAAAAATCAGCAAGTGAGAAGGAACATATGCAAGTATACATAGACTCTGAGATGTTGAAGGATGTATTTAGATTCAGCAGGCAAGAGCTTGAAGTAGCATGTGAAGATTTCAGCAACATAATAGGCTCCTCACCAGATAGTTTAGTCTACAAAGGCACTATGAAAGGTGGGCCCGAGATTGCTGTGATATCCCTATGCATCAAAGAGGAGCATTGGATGGGCTATCTCGAGCTCTATTTTCAGAAGGAGGTGGCAGATTTGGCAAGATTAAATCATGAGAATACAGGAAAATTACTGGGCTATTGTCGAGAGAGCTCTCCATTTACAAGAATGCTGGTTTTTGAATATGCATCGAATGGAACGCTCTATGAGCACCTTCATTATGGAGAAGGATGCCAATTATCATGGACGCGGCGCATGAAGATTATTATAGGGATTGGCCGTGGCCTAAAATATCTGCACACAGAACTTGATCCACCATTTACCATATCCGAGTTAAATTCGAGTGCTGTGTATATCACAGAAGATTTTTCTCCCAAGCTAGTTGACTTTGAAAGTTGGAAGTCAATTCTTTCAAGATCAGAAAAGAACTCAGGCTCCATTGGCAGCCAAGGTGCCATCTGTGTTCTTCCAAATTCTCTGGAGGGACGCCATCTAGATGTTCAAGGCAACGTTTATGCATTTGGTGTACTTTTGCTGGAGATTATGAGTGGGAGACCTCCATACTGCAAGGACAAGGGTTGCTTGGTTGAATGGGCTAGGGACTATCTTGACCTACCAGAAGCAATGTCATATGTGGTGGATCCTGAGTTGAAACATTTCAGATATGATGACCTTAAAGTCATATGTGAGGTGGTGAATCTTTGCATTCATCCCGAACCCACCAAGCGGCCATCCATGCAAGAACTGTGCACCATGTTGGAGACCAAAATTGACACATCCATATCTTCCGAGCTTAAGGCATCTTCTCTGGCGTGGGCTGAGCTTGCACTTTCATCGTGA 1983 0.4413 MRSSSSLQLLWVVFGVLFASCDAFASNEVSALNTLKEGIYEDPLTVLSTWNTVDSDPCDWSGITCSEARDHVIKINISGSSLKGFLTPELGQLSSLQELILHGNNLIGVIPKEIGSLKNLKVLDLGMNQLTGPIPPEIGNLTSIVKINLESNGLSGRLPPELGNLRHLEELRLDRNRLEGTVPGSNTSNFVSDVNGMYASSRNITGLCRSSQFKVADFSYNFFVGSIPKCLSYLPRTSFQGNCLQDTAPRQRSTVQCAVPPPAKSHPGVGPKHQPTLDGPKHQDTSKPAWLLALEIVTGTMVGSLCIIALLTALQRCKSKSSIIIPWKKSASEKEHMQVYIDSEMLKDVFRFSRQELEVACEDFSNIIGSSPDSLVYKGTMKGGPEIAVISLCIKEEHWMGYLELYFQKEVADLARLNHENTGKLLGYCRESSPFTRMLVFEYASNGTLYEHLHYGEGCQLSWTRRMKIIIGIGRGLKYLHTELDPPFTISELNSSAVYITEDFSPKLVDFESWKSILSRSEKNSGSIGSQGAICVLPNSLEGRHLDVQGNVYAFGVLLLEIMSGRPPYCKDKGCLVEWARDYLDLPEAMSYVVDPELKHFRYDDLKVICEVVNLCIHPEPTKRPSMQELCTMLETKIDTSISSELKASSLAWAELALSS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0389 660 Gene3D Transferase(Phosphotransferase) domain 1 444 651 - -
Vvi2g0389 660 MobiDBLite consensus disorder prediction 254 283 - -
Vvi2g0389 660 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vvi2g0389 660 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Vvi2g0389 660 Pfam Protein tyrosine and serine/threonine kinase 366 633 IPR001245 GO:0004672|GO:0006468
Vvi2g0389 660 Gene3D Ribonuclease Inhibitor 141 258 IPR032675 -
Vvi2g0389 660 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Vvi2g0389 660 ProSiteProfiles Protein kinase domain profile. 362 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0389 660 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi2g0389 660 Gene3D Phosphorylase Kinase; domain 1 333 443 - -
Vvi2g0389 660 SUPERFAMILY L domain-like 27 236 - -
Vvi2g0389 660 FunFam Inactive receptor-like serine/threonine-protein kinase 336 443 - -
Vvi2g0389 660 SUPERFAMILY Protein kinase-like (PK-like) 339 635 IPR011009 -
Vvi2g0389 660 SMART LRR_typ_2 117 141 IPR003591 -
Vvi2g0389 660 SMART LRR_typ_2 165 188 IPR003591 -
Vvi2g0389 660 SMART LRR_typ_2 93 116 IPR003591 -
Vvi2g0389 660 PANTHER PROTEIN MALE DISCOVERER 2 15 658 - -
Vvi2g0389 660 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0389 Vvi-Chr2 3216586 3221315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0389 41 639 Receptor kinase-like Gene Family AT5G45780 28.805 2.04e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vvi2g0389 PK_Tyr_Ser-Thr 5.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0389 - - vvi:100258246 1281.16