Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0384 ATGGCGCCCAAGTTTCTGTCCTCTACTCGAAATGAGAGGTCCGGAAAGGGCGTGCCGGAGAAGGAGGAGAATGCGGAAGGATCGCAGGCCAAGGCGATGTATTCGGTGACCGGAATGACGTGCTCCGCCTGCTCCGGACAGGTGGAGAGGGCCCTCAGGCAGCTGCCGGGGATCCAAGACGCGGTCGTTGATGCTCTCAGTAATAGGGCTCAGGTCACGTTTTATCCGGCTTTGATTAACGAGGAGACAATCCGTGAGACCATTGAAGATGTGGGTTATCAGGCCACATTGATTCAAGATCATCAGACAAATGCCAAATCCACTCAAATGTATGAGGAAGCACAAGTGCATTATGATCCCAAGATGGTAAGCTACAAAGAGCTTTTGGAAGCCATAGAAGATACTGGGTCTGTAGCTATACTTATTACTACTGGCTACATGAGCAAGCTTCAGCTTAAAGTTGATGGAGCAATGATATTCCCTGAAGGAGGAAGAGAAGTTCATGAAAAGGAGATTGAGCGAAATTATAGATCATTTCTATGGAGTTTGGTCTTTGCAATTCCAGTATTCTTAACCTCCATGGTCTTTATATTTTGA 597 0.4707 MAPKFLSSTRNERSGKGVPEKEENAEGSQAKAMYSVTGMTCSACSGQVERALRQLPGIQDAVVDALSNRAQVTFYPALINEETIRETIEDVGYQATLIQDHQTNAKSTQMYEEAQVHYDPKMVSYKELLEAIEDTGSVAILITTGYMSKLQLKVDGAMIFPEGGREVHEKEIERNYRSFLWSLVFAIPVFLTSMVFIF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0384 198 ProSiteProfiles Heavy-metal-associated domain profile. 30 96 IPR006121 GO:0046872
Vvi2g0384 198 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 21 109 - -
Vvi2g0384 198 Pfam Heavy-metal-associated domain 35 94 IPR006121 GO:0046872
Vvi2g0384 198 FunFam Copper-transporting ATPase HMA5 29 100 - -
Vvi2g0384 198 CDD HMA 33 96 IPR006121 GO:0046872
Vvi2g0384 198 Gene3D - 29 104 - -
Vvi2g0384 198 MobiDBLite consensus disorder prediction 1 30 - -
Vvi2g0384 198 SUPERFAMILY HMA, heavy metal-associated domain 28 101 IPR036163 GO:0046872
Vvi2g0384 198 PRINTS Copper-transporting ATPase 1 signature 57 80 - -
Vvi2g0384 198 PRINTS Copper-transporting ATPase 1 signature 190 198 - -
Vvi2g0384 198 PRINTS Copper-transporting ATPase 1 signature 86 106 - -
Vvi2g0384 198 PRINTS Copper-transporting ATPase 1 signature 31 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0384 Vvi-Chr2 3184222 3186776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0384 20 198 Primary Pumps ATPases AT1G63440 30.516 9.58e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0384 K17686 - vvi:100242756 286.189