Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0383 ATGATCACAGGGGAAGCCAGGCCTGTGGCGAAGAGGAAGGGTGACACAGTCATTGGAGGCACTGTGAACGAGGATGGTGTGTTACATGTTGAGGCGACACAGGTTGGATCAGAAAGTGCTCTGTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCCAAAGCTCCTGTGCAGAAATTTGCAGACCGCATCTCCAAATACTTTGTTCCTTTGGTTATTATCCTTTCATTTTCCACTTGGCTTTCCTGGTTTTTAGCAGGAAAGTTTCATAGGTATCCAAAATCTTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCACTCCAATTTGGAATCTCTGTCATGGTCATAGCGTGCCCATGTGCTCTGGGCCTTGCAACTCCTACTGCTGTTATGGTTGGTACTGGTGTTGGAGCTTCTCAGGGTGTCCTCATCAAAGGCGGCCAAGCATTAGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCTATGAACTTGTTGCAGCCACTGAGGTGAACAGTGAGCACCCACTAGCCAAGGCCATTGTAGAATATGCTAAGAAATTCAGAGAAGATGAAGAGAATCCCACCTGGCCAGAAGCCAAAGATTTCGTCTCCATTACTGGGAATGGTGTGAAAGCCATTGTTCGCAACAAAGAGATCATAGTGGGCAACAAGAGTTTAATGTTAGACCAGAACATTGCCATTCCATTTGAAGCTGAAGACATGCTGGCAGAAACAGAAGCAATGGCTCAAACTGGGATTCTGATATCCATTGAAGGGGAGCTGGCAGGAGTTCTAGCCATATCCGATCCATTGAAGCCTGGTGCTCGTGACGTCATATCTATTCTCAAGTCCATGAAAGTGAAGAGTATAATAGTGACAGGTGACAATTGGGGAACTGCAAATTCCATAGCAAAGGAGGTTGGAATTGAAACTGTCATTGCTGAAGCCAAACCTGAGCAGAAAGCAGAAAAAGTGAAGGATTTACAGGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACATCGCCATTGAAGCAGCAGACATTGTTCTCATGAAAAGCAACTTGGAAGATGTGATAACTGCCATTGATCTTTCCAGAAAAACATTTTCCCGTATCCGCCTGAACTACATATGGGCACTAGGGTATAATCTCCTAGGCATACCAATTGCGGCCGGAGCTCTTTTCCCATCTATTGGATTGCGTTTACCACCATGGATTGCAGGAGCTGCCATGGCAGCCTCTTCAGTCAGTGTTGTTTGCTGCTCACTTCTGTTGAAGAACTATAGAAGACCCAAGAAGCTGGATGGGCTTGAGATGCAGGGAGTGACAGTTGAGTGA 1491 0.4621 MITGEARPVAKRKGDTVIGGTVNEDGVLHVEATQVGSESALSQIVQLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLSWFLAGKFHRYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTRLLKNMALQEFYELVAATEVNSEHPLAKAIVEYAKKFREDEENPTWPEAKDFVSITGNGVKAIVRNKEIIVGNKSLMLDQNIAIPFEAEDMLAETEAMAQTGILISIEGELAGVLAISDPLKPGARDVISILKSMKVKSIIVTGDNWGTANSIAKEVGIETVIAEAKPEQKAEKVKDLQASGNIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSIGLRLPPWIAGAAMAASSVSVVCCSLLLKNYRRPKKLDGLEMQGVTVE* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0383 496 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 456 IPR023298 -
Vvi2g0383 496 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 494 - -
Vvi2g0383 496 Gene3D - 248 298 IPR023299 GO:0000166
Vvi2g0383 496 Gene3D - 169 247 IPR023299 GO:0000166
Vvi2g0383 496 Pfam E1-E2 ATPase 1 140 - -
Vvi2g0383 496 SFLD C1.7: P-type atpase like 144 419 - -
Vvi2g0383 496 Gene3D - 1 52 - -
Vvi2g0383 496 PRINTS H+-transporting ATPase (proton pump) signature 367 383 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0383 496 PRINTS H+-transporting ATPase (proton pump) signature 398 423 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0383 496 NCBIfam heavy metal translocating P-type ATPase 1 476 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vvi2g0383 496 Gene3D - 129 424 IPR023214 -
Vvi2g0383 496 CDD P-type_ATPase_Cu-like 1 478 - -
Vvi2g0383 496 SUPERFAMILY HAD-like 161 473 IPR036412 -
Vvi2g0383 496 NCBIfam HAD-IC family P-type ATPase 1 446 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0383 496 FunFam Probable copper-transporting ATPase HMA5 270 424 - -
Vvi2g0383 496 Pfam haloacid dehalogenase-like hydrolase 158 381 - -
Vvi2g0383 496 SFLD p-type atpase 144 419 IPR044492 -
Vvi2g0383 496 SUPERFAMILY Calcium ATPase, transduction domain A 1 48 IPR008250 -
Vvi2g0383 496 PRINTS P-type cation-transporting ATPase superfamily signature 390 402 - -
Vvi2g0383 496 PRINTS P-type cation-transporting ATPase superfamily signature 314 324 - -
Vvi2g0383 496 PRINTS P-type cation-transporting ATPase superfamily signature 292 303 - -
Vvi2g0383 496 PRINTS P-type cation-transporting ATPase superfamily signature 367 386 - -
Vvi2g0383 496 PRINTS P-type cation-transporting ATPase superfamily signature 162 176 - -
Vvi2g0383 496 ProSitePatterns E1-E2 ATPases phosphorylation site. 164 170 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0383 Vvi-Chr2 3181551 3183754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0383 1 496 Primary Pumps ATPases AT1G63440 84.476 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0383 K17686 - vvi:100242756 942.569