Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0377 ATGGATGGAAGAGAAGCCATGGCCTTATCTGGGTCACCACCATATTATATACATAGAGGGGTTGTTGGGTCTGCTTCATTGTCTGGGTCTGGTATACACTCCGGGGGGTTACATGCACCGCCTGGGTTCAGGCCCTTATCAAACCCTGGGATTCCAGTTCAATCGAATGTTAGAAACAATTCCGTTGGACAGACATTTTCAGTAGATCATTCACAGACCAATTTTCCTCATGGGTTTAACATGGCTGTGCCCTCTGGAGTACCACCGGCTGAGCCCGTAAAGAGGAAAAGAGGGAGACCCCGGAAATATGGTCCCGATGGGAATGTGTCTTTGGGACTGTCTCCCATGTCTGCTCGTCCTTCACTTGGATCTGGGTCGGTTACCCCGACGCAGAAACGGGGTAGGGGTCGGCCACCTGGTACTGGAAGGAAGCAACAATTGGCTACTCTTGGTGAATGGATGAACAGTTCTGCTGGACTGGCTTTTGCACCACATGTCATCAGCATGGCAGTTGGAGAGGACATTGCAACAAGAATATTATCATTTTCACAACAAAGGCCAAGGGCTCTGTGCATTTTGTCAGCCAGTGGTACGGTCTCTGCAGTAACTTTACGTCAGCCTACATCTTCCAGTGGCACTGTTACATATGAGGGCCGTTTCGAGATTTTATGTTTATCAGGTTCGTATTTGCCTGCTGAAACTGGTGGCCCCCGCAACCGAATTGGTGGTATAAGTGTTTCCCTTTGTAGTCCTGATGGTCATGTAATTGGGGGTGGAGTTGGAGGGATGCTTATAGCTGCAAGTCCAGTTCAGGTGGTAGCGTGTAGCTTTGTTTATGGCGGTTCTAAGACAAAGAACAAAAATGGGGATGAGCCTAAAGGTGATCAAAACTCAGGGCTTCAGCCAAGCGAGTCGGCTGCTCCATCAAGTGTTCCTCTTGGTCAACATTTCGCACCTATTTCAGCAATGGGCATGTGGCCCAGTTCACGACAGGTAGACCTGAGGAACCCCCACACTGATATTGACTTGACACGTGGATGA 1041 0.4928 MDGREAMALSGSPPYYIHRGVVGSASLSGSGIHSGGLHAPPGFRPLSNPGIPVQSNVRNNSVGQTFSVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPMSARPSLGSGSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIATRILSFSQQRPRALCILSASGTVSAVTLRQPTSSSGTVTYEGRFEILCLSGSYLPAETGGPRNRIGGISVSLCSPDGHVIGGGVGGMLIAASPVQVVACSFVYGGSKTKNKNGDEPKGDQNSGLQPSESAAPSSVPLGQHFAPISAMGMWPSSRQVDLRNPHTDIDLTRG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0377 346 CDD DUF296 164 277 IPR005175 -
Vvi2g0377 346 Gene3D - 164 289 - -
Vvi2g0377 346 SMART AT_hook_2 94 106 IPR017956 GO:0003677
Vvi2g0377 346 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Vvi2g0377 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 68 307 IPR039605 GO:0003680
Vvi2g0377 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 278 IPR005175 -
Vvi2g0377 346 MobiDBLite consensus disorder prediction 293 310 - -
Vvi2g0377 346 MobiDBLite consensus disorder prediction 284 346 - -
Vvi2g0377 346 ProSiteProfiles PPC domain profile profile. 156 303 IPR005175 -
Vvi2g0377 346 MobiDBLite consensus disorder prediction 80 144 - -
Vvi2g0377 346 MobiDBLite consensus disorder prediction 114 131 - -
Vvi2g0377 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0377 Vvi-Chr2 3130878 3137008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0377 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 52.972 1.38e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0377 - - vvi:100249560 647.891