Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0374 ATGGGGAAGGGGAGACCTAGGGCAGTGGAGAAAGGGGTGTTAGGGCAAAGTTCAAGTGTTTCATTATCAGGGTCACTGGGTATACCACCTGGGCCCGTGTATTACCCCAGTGAGGACGAGTTTAAGGACCCTTTGGAGTATATATACAGGATCAGGCCAGAGGCTGAGCCATATGGGATCTGTAGGATTGTTCCACCCAAGAGTTGGAAGCCACCTTTTGGATTAGATTTGGATTCTTTCACTTTTCCAACTAAAACTCAAGCTATTCATCAGTTACAAGCACGGCCAGCGGCCTGCGATTCAAAGACATTTGATTTGGAGTATAATAGGTTTTTGGACAATCATTGTGGGAAGAAGTCGAAGAAGAGGGTGGTTTTTGAGGGGGAGGAGTTGGATTTGTGTAGATTATTTAATGCGGCAAAGCGGTTTGGTGGTTATGATAAGGTTGTGAAAGAGAAGAAGTGGGGGGAGGTTTGTAGGTTTGTGCTGTCAGGGAGGAAGATTTCAGAGTGTGCGAAGCATGTTCTGTGTCAGTTGTATAGGGAGCATTTATATGATTATGAGGACTATTACAATCGATTGAATCATGGGGTAGTTAGGAGTTGTAAGAGAGGAATGCATGGGGAGAAGAAGGGCGAACATGGGGTCGAGTCTTTGAGTTCCAAAAGAAGGCGGAGAAATACTGATGGTGAGAAAGTTAAAGTTTGTAAGGTAGAAGAGAAGGAGGAAGAGTTTGATCAGATATGTGAACAATGTAAAAGTGGCTTGCATGGGGAAGTGATGCTTTTGTGTGATAGGTGTAATAAGGGATGGCACATTTATTGTCTAGCACCCCCTTTAAAGCGGATTCCCCCAGGGAATTGGTATTGCTTGGAATGCTTGAATTCTGATGAGGATAGCTTTGGTTTTGTGCCGGGTAAACGTTTCTCATTGGAAGCTTTCAGGCGTGTGGCTGATAGAGCAAAGAGGAAGTGGTTTGGGTCTGTATCCCCCTCAAGAATGCAAATAGAGAAAAAGTTTTGGGAAATTGTGGAGGGATTAGTGGGTGAGGTTGAAGTCATGTATGGCAGTGACTTGGATACTTCTGTATATGGGAGTGGTTTTCCTCGTGTAAATGACAAGAAACCAGAATCCGTTGAGGATGAGATTTGGGATAAATACTGTGCTAGCCCATGGAATCTCAACAATTTGCCCAAGTTGCAGGGTTCGATGCTTCGAGCTGTCCATAATAACATTGCTGGTGTAATGGTACCCTGGCTGTATGTTGGAATGCTATTCTCATCATTTTGTTGGCATTTTGAGGATCACTGTTTCTATTCAATGAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAGGTGATGCGGAACTGTCTTCCTGATCTATTTGATGCCCAACCGGATCTGCTCTTTCAGCTTGTGACCATGCTGGACCCATCTGTGTTGCAAGAAAATGGAGTTTCTGTTTATAGTGTAATTCAGGAGCCTGGAAACTTTGTCATCACCTTTCCCAGATCTTATCATGGCGGTTTCAATTTTGGCTTAAATTGTGCCGAGGCTGTCAATTTTGCTCCTGCTGACTGGCTTCCTCATGGTGGATTTGGAGCAGAGCTATATCAGCTGTATCGGAAAGCTGCTGTTTTATCTCATGAAGAGCTGCTCTGTGTGGTAGCCAAGGCTAATGACTGTGATAGCAAAGCATTACCTTATTTGAAGAAAGAATTGCATAGAATATATGCCAAGGAGAAAAATTGTAGAGAGGGACTCTGGAGCAATGGCATCATCAAGTCATCTCCTATGTCACCAAAGAAGTGTCCTGAATTTGTGGGTACTGAAGAGGATCCAACATGCATTATATGCCAGCAGTACCTGTTTCTTTCTGCTGTTGTTTGCTGCTGTAGGCCATCTGCTTTTGTATGTCTTGAGCATTGTAAGCATCTTTGTGAATGCAAACCCAACAAACATCGCCTTCTGTACCGTCACACACTGGCAGAATTGAAGCAGTTGGTGCTGTTGATAGATAAATATAACTTTGACGAGACACCCCAATGTAGAGATTTACAAAGGCAGCTTTCATGTTCTGATGATTCGAATGCTTTGACAAAAAAGGTGAAAGGTGGCCATGTTTCTCTCGCCAAACTGGCAGAAGAATGGATTTTGCGTTCTTCTAAGATTTTTCAGATTCCATTTTCCAGAGACGCTTATGTTAATGCATTGAAGGAAACTGAACAATTTCTTTGGGCTGGTTCTGAAATGGATGCGGTGAGGGCCGTGGCAAAGAATTTGATTGAAGCCCAGAATTGGGCTGAAGGCATAAAAGATTGTCTTTGTAAAATTGAATCATGGTCATGTAATCGGAGCCACAATTTGGAGAAAGTAGATTTGGAACATGTTAACAATTTTCTGAATTTGAATCCTCTGCCTTGCATTGAGCCTGGGCATCTTAAATTAAAGGGTTATGCAGAAGAGGCAATGATTTTGGTTCAGGAAATTGATTCTGCCTTGTCAACGAGTTCAAAATCCTCTATCCCTGAGTTGGAACAGCTATATTCCAGAGCGTGTGAGGTACCTATCTATGTAAAGGAAATGGAGAAGTTGATGGCAAGGATTTCTGCATTGAAGGTTTGGGTGGACAATGTAAAAAAATGCATCCTTGAGAAATGCCCTGCAGCAATTGAGGTTGATGTCCTTTACAGGTTAAAGTCAGAGATGCTGGAGCTTCAAGTTCAGCTCCCTGAAGTAGAAATGCTTATGGATCTTTTACGACACGTTGAATCATGTCAGGCCCGATGTAATGAGATATTGAATGGTCCTATTAATCTCAAGAATGTTGAAGTGCTTCTTCAAGAATTGGAAAGCATTACTGTCAACATCCCAGAGTTGAAACTTCTGAGGCAATATCATGGTGATGCTGTTTCCTGGATTTCACACTTTAATGATGTTCATGTGAACATTCATGAACGGGAGGATCAAGAAAATGTAGTTGATGAGTTACAGTGCATTCTAAAGCAGGGATTGTTGTTGAGAATTCAAGTCGATGAGTTGCCTCTTGTGGAGGTTGAGTTGAAGAAGGCTTATTGCAGGAAAGAGGCTCTGAAGGCGCGTCGTACTAAAATGACTCTGTTCTCCATCCAGCAACTAATGGAGGAGGCTGCCATGCTACAGATCGAAGGAGAGCAATTATTTGTTGATGTTTCTGGAGTACTTGCAGCTGCTATGCATTGGGAAGAAAGAGCAGCACATATTTTTGCAACTGAGGCTCAGATGTCTGACTTCGAGGATGTTATAAGGACTTCAAAGGACATACATGTGATTCTACCTTCTCTTGATGATGTCAAGGATGCAATTTCAATGGCTAAGTCCTGGTTAAAGAACTCTAAGCCATTTTTAGGGTCTTCTTTTCCTGCCGCACATCCCTCCTGTTCCTTGCTGAAAGTTGAGGCACTGAAGGAGTTGGTTTCTCAGTCAAAGCTTTTGAAGATATCCCTGGAAGAACGAACCATGATCCATTCTGTTTTAAAGAATTGCTTGGAATGGGAGCATGATTCCTGCTCTCTGTTAGAAGAAGTGGATTGCCTATTTAACACAAATAATATTGACAATGCATTGATTAATGGTCTTATTCCAAAAATCGAGCATCTTGTTACTATGATTGAATCTATCTTGGAAACTGGTTTATCTCTTGGTTTTGATTTTGATGAGATTCCAAAACTTCAAAATGCTCGCTCTATACTGCAATGGTGCAGTAAGGCTCTTTCTTTCTGTTCTGTAGCTCCTGCACTTCCGGGGATCGAGAGCTTGATGGAGAATGCAGAACACCTTCCTGTTACATGCGCCTCCAGTGCTCTCTGCAGCTCATTGATTGATGGGGTTAAATGGCTTAAGAAAGCATCAGAGGTGATTCCTGTTTCATGCAATGGCAAAATATGCAAATTAAGTGATGCCGAAGAAGTTCTTTCCGAAGTTCAGAGGATTAAAGTTTCCTTTCCATTGATGGTTGGTCAACTTTTAAAAGCTATTGAGAAACATAAGTTGTGGAAAGAGCAAATTCTTATCTTTTTTGGTTTGAAAACTGAAGAACGATCTTGGTCTAAATTGTTACAACTTAAGGAACTTGGAAAGGATGATGCTTTCAGTTGTTGTGAGTTAGATATGGTTTTATCTGAAACTGAAAAGGTAGAGAAGTGGAAGCTACACTGCATGGACATTGTGGGGCACCCAGTTGGAGATATTAAACATACTCTAGATAGATCTTTGTATATATACAAGAAGTCCAGGGGTTGCAATCCCAGAGATCCATGCATTCACTGCTTCAGTGACATTAAGGATCAGGAGTTACTAACCTGTTCGATATGCAAGGACTGCTACCATTTGCAGTGCCTAGGAGCAACACTAGGTCATCAAAGTGATGCAGAAGCATATGTATGCTCTTATTGCCAATTCATAGGGAGTGGGTCCATTTCTCGAAATGGTGGTGCTCTGAGATTTGGAGGGAAACGCCCAGAACTGAACATGCTCATTGAGCTTCTGTCTGATGCTGAAGGTTTATGTGTAGGGATTGAAGAAAGAGATGTAGTACAGCAACTTGTGGAGCTAGCTATTGCCTGCAAAGATTGTCTAACAGAATTGACAGACTTTACCTTAGCTTATCTTAATAGAGATCTCAGCATCATCTCAGAAAAACTAACTACTGCTCTGAAGGCAGTTGAAATGGCAGGTGTCTATTATAATCATGGAAACAACAGACTTGAGCTGGCATTAGCAAGAAACTCATGGAGAGTCAGGGTGAATAAATTGTTAGAGGATTCTCAGAAGCCCCTGATCCAACATATTCAAAAAATTTTGAAAGAGGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAGGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCACACAGGGTGAAAACTTGCCTGTTCATTTTGAAAAGGAACTTAAGTTATTAAGAGCTCGAAGTATGCTTTACTGCATTTGCCGAAAGCCCTATGATCAGAGAGCAATGATTGCCTGTGATCAATGTGATGAGTGGTATCACTTCGATTGTATCAAATTATCTTCAGCACCAAAAATCTATATCTGCCCTGCATGTAAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACAGAATCAAGAAGGAAAAATATAGAAGCTAAGCCGAGCCTAAAGCAAATGATGCCTGCAGCTATGGATCACGGTAATATCTTAAGGTATTCTGATGGAATTGATTGTTTGTTTTGGAGAAACCGGAAGCCTTTCAGAAGAGTGGCTAAAAGGCGAGCTGAGGTTGAAAGCCTCTCCCCATTTTTCCATATACAGTGA 5526 0.42 MGKGRPRAVEKGVLGQSSSVSLSGSLGIPPGPVYYPSEDEFKDPLEYIYRIRPEAEPYGICRIVPPKSWKPPFGLDLDSFTFPTKTQAIHQLQARPAACDSKTFDLEYNRFLDNHCGKKSKKRVVFEGEELDLCRLFNAAKRFGGYDKVVKEKKWGEVCRFVLSGRKISECAKHVLCQLYREHLYDYEDYYNRLNHGVVRSCKRGMHGEKKGEHGVESLSSKRRRRNTDGEKVKVCKVEEKEEEFDQICEQCKSGLHGEVMLLCDRCNKGWHIYCLAPPLKRIPPGNWYCLECLNSDEDSFGFVPGKRFSLEAFRRVADRAKRKWFGSVSPSRMQIEKKFWEIVEGLVGEVEVMYGSDLDTSVYGSGFPRVNDKKPESVEDEIWDKYCASPWNLNNLPKLQGSMLRAVHNNIAGVMVPWLYVGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEAIAFEKVMRNCLPDLFDAQPDLLFQLVTMLDPSVLQENGVSVYSVIQEPGNFVITFPRSYHGGFNFGLNCAEAVNFAPADWLPHGGFGAELYQLYRKAAVLSHEELLCVVAKANDCDSKALPYLKKELHRIYAKEKNCREGLWSNGIIKSSPMSPKKCPEFVGTEEDPTCIICQQYLFLSAVVCCCRPSAFVCLEHCKHLCECKPNKHRLLYRHTLAELKQLVLLIDKYNFDETPQCRDLQRQLSCSDDSNALTKKVKGGHVSLAKLAEEWILRSSKIFQIPFSRDAYVNALKETEQFLWAGSEMDAVRAVAKNLIEAQNWAEGIKDCLCKIESWSCNRSHNLEKVDLEHVNNFLNLNPLPCIEPGHLKLKGYAEEAMILVQEIDSALSTSSKSSIPELEQLYSRACEVPIYVKEMEKLMARISALKVWVDNVKKCILEKCPAAIEVDVLYRLKSEMLELQVQLPEVEMLMDLLRHVESCQARCNEILNGPINLKNVEVLLQELESITVNIPELKLLRQYHGDAVSWISHFNDVHVNIHEREDQENVVDELQCILKQGLLLRIQVDELPLVEVELKKAYCRKEALKARRTKMTLFSIQQLMEEAAMLQIEGEQLFVDVSGVLAAAMHWEERAAHIFATEAQMSDFEDVIRTSKDIHVILPSLDDVKDAISMAKSWLKNSKPFLGSSFPAAHPSCSLLKVEALKELVSQSKLLKISLEERTMIHSVLKNCLEWEHDSCSLLEEVDCLFNTNNIDNALINGLIPKIEHLVTMIESILETGLSLGFDFDEIPKLQNARSILQWCSKALSFCSVAPALPGIESLMENAEHLPVTCASSALCSSLIDGVKWLKKASEVIPVSCNGKICKLSDAEEVLSEVQRIKVSFPLMVGQLLKAIEKHKLWKEQILIFFGLKTEERSWSKLLQLKELGKDDAFSCCELDMVLSETEKVEKWKLHCMDIVGHPVGDIKHTLDRSLYIYKKSRGCNPRDPCIHCFSDIKDQELLTCSICKDCYHLQCLGATLGHQSDAEAYVCSYCQFIGSGSISRNGGALRFGGKRPELNMLIELLSDAEGLCVGIEERDVVQQLVELAIACKDCLTELTDFTLAYLNRDLSIISEKLTTALKAVEMAGVYYNHGNNRLELALARNSWRVRVNKLLEDSQKPLIQHIQKILKEGLAISIPPEDHFRQKLTELKCIGLQWAENAKKVSMDSGALGLDEVCELITQGENLPVHFEKELKLLRARSMLYCICRKPYDQRAMIACDQCDEWYHFDCIKLSSAPKIYICPACKPHTGELSVLLSVNKERSTGAKYGEPQTPSPPHTESRRKNIEAKPSLKQMMPAAMDHGNILRYSDGIDCLFWRNRKPFRRVAKRRAEVESLSPFFHIQ* 1842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0374 1841 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 832 - -
Vvi2g0374 1841 ProSiteProfiles Zinc finger PHD-type profile. 246 296 IPR019787 -
Vvi2g0374 1841 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g0374 1841 SMART PHD_3 248 294 IPR001965 -
Vvi2g0374 1841 SMART PHD_3 1702 1744 IPR001965 -
Vvi2g0374 1841 SMART PHD_3 1445 1492 IPR001965 -
Vvi2g0374 1841 ProSiteProfiles JmjC domain profile. 386 552 IPR003347 -
Vvi2g0374 1841 SMART ARID_2 98 188 - -
Vvi2g0374 1841 SUPERFAMILY FYVE/PHD zinc finger 234 294 IPR011011 -
Vvi2g0374 1841 Gene3D Cupin 294 585 - -
Vvi2g0374 1841 SMART JmjN_1 30 71 IPR003349 -
Vvi2g0374 1841 CDD PHD_SF 1446 1491 - -
Vvi2g0374 1841 CDD ARID 100 188 - -
Vvi2g0374 1841 SMART bright_3 99 193 IPR001606 GO:0003677
Vvi2g0374 1841 SUPERFAMILY ARID-like 81 203 IPR036431 GO:0003677
Vvi2g0374 1841 MobiDBLite consensus disorder prediction 1763 1777 - -
Vvi2g0374 1841 MobiDBLite consensus disorder prediction 1763 1782 - -
Vvi2g0374 1841 Pfam jmjN domain 32 65 IPR003349 -
Vvi2g0374 1841 SUPERFAMILY Clavaminate synthase-like 364 567 - -
Vvi2g0374 1841 Pfam PHD-finger 1702 1745 IPR019787 -
Vvi2g0374 1841 Pfam PHD-finger 248 295 IPR019787 -
Vvi2g0374 1841 Pfam JmjC domain, hydroxylase 419 535 IPR003347 -
Vvi2g0374 1841 SUPERFAMILY FYVE/PHD zinc finger 1438 1495 IPR011011 -
Vvi2g0374 1841 ProSitePatterns Zinc finger PHD-type signature. 1703 1743 IPR019786 -
Vvi2g0374 1841 Pfam C5HC2 zinc finger 629 681 IPR004198 -
Vvi2g0374 1841 FunFam Predicted protein 354 557 - -
Vvi2g0374 1841 Gene3D - 157 293 - -
Vvi2g0374 1841 Pfam PLU-1-like protein 762 1037 IPR013637 -
Vvi2g0374 1841 Pfam PLU-1-like protein 1156 1364 IPR013637 -
Vvi2g0374 1841 Pfam PLU-1-like protein 904 1191 IPR013637 -
Vvi2g0374 1841 Gene3D Cupin 16 143 - -
Vvi2g0374 1841 ProSitePatterns Zinc finger PHD-type signature. 249 293 IPR019786 -
Vvi2g0374 1841 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Vvi2g0374 1841 Pfam ARID/BRIGHT DNA binding domain 109 188 IPR001606 GO:0003677
Vvi2g0374 1841 Gene3D Cupin 1697 1805 - -
Vvi2g0374 1841 MobiDBLite consensus disorder prediction 206 226 - -
Vvi2g0374 1841 SUPERFAMILY FYVE/PHD zinc finger 1699 1750 IPR011011 -
Vvi2g0374 1841 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
Vvi2g0374 1841 CDD PHD_RSF1 249 293 - -
Vvi2g0374 1841 SMART cupin_9 386 552 IPR003347 -
Vvi2g0374 1841 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0374 Vvi-Chr2 3074637 3118920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0374 40 95 JUMONJI Transcription Factor Family AT4G20400 50.000 8.41e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi2g0374 PLU-1 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0374 K11446 - vvi:100261599 3717.16