Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0373 ATGGGCTGTCAATGTTCTAAATTCTGGGTCTGTTGCTGGGATTCCGAACAGAAAGGACTAGTTGTAGAGCCTCCCAGTGTTGAAAATGAGGAGAACAGTGAAGCTGATGATTTGCCTGCTTTTCATGAATACACTATTGATCAACTGAGGATGGCTACATCTGGATTTGCTGCGGAGAACATAGTTTCTGAACATGGTGAAAAGGCTCCCAATGTGGTTTATAAAGGGAAACTTGAGAATCAAAGGCGGATTGCTGTCAAACGTTTTAATAAATCAGCCTGGCCTGATGCCAGGCAATTTTTGGAAGAAGCAAGATCTGTTGGGCAGCTCCGAAATCACAGATTGGCAAATTTGCTTGGTTGTTGTTCTGAAGGAGATGAGAGGTTACTTGTCGCAGAATTTATGCCCAATGACACACTTGCAAAGCACCTGTTTCATTGGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATGATGGCGATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGATGGAAAAAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCTTGGAAGGCCAATTTTCAAGTGATGATGGGACTGAATTAGTGCGTTTAGCATCACGATGTTTACAATATGAGCCCCGAGAGCGGCCCAATCCAAAGTCATTAGTTGCTGCTTTAATTCCTCTTCAGAAGGAAACTGAGGTTCCTTCTCATGTATTGATGGGTATGCCTCAAAGTGGTGCAACTTTACCTTTATCACCCCTGGGTGAAGCTTGTTTAAGAATGGATTTGACTGCCATTCACGAGATTTTAGAAAAGCTTGGGTATAAAGATGATGAGGGAGCAACAACTGAGCTTTCATTCCAGATGTGGACCAACCAGATGCAAGAAACATTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCCGGCACAAAGATTTTAGAGCTGCAATTGAATGCTATACCCAGTTTATTGATGTTGGAACCATGGTTTCTCCAACTGTTTTTGCACGCCGTAGTCTGTGCTATCTCATGAGTGATATGCCACAGGAAGCCCTTAATGATGCAGTGCAAGCCCAAGTAATATCCCCCATTTGGCACATAGCATCCTATTTACAAGCTGTAGCTCTTTCTGCTTTGGGAAGGGAGAATGAGTCAGAGGTAACCCTTAAAGAAGGCTCAGTACTTGAAGAGAAGAAGAATAAAACTGCTTGA 1467 0.4213 MGCQCSKFWVCCWDSEQKGLVVEPPSVENEENSEADDLPAFHEYTIDQLRMATSGFAAENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNKSAWPDARQFLEEARSVGQLRNHRLANLLGCCSEGDERLLVAEFMPNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRIVFDDDGDPRLSCFGMMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIQMLTDSCLEGQFSSDDGTELVRLASRCLQYEPRERPNPKSLVAALIPLQKETEVPSHVLMGMPQSGATLPLSPLGEACLRMDLTAIHEILEKLGYKDDEGATTELSFQMWTNQMQETLNSKKKGDVAFRHKDFRAAIECYTQFIDVGTMVSPTVFARRSLCYLMSDMPQEALNDAVQAQVISPIWHIASYLQAVALSALGRENESEVTLKEGSVLEEKKNKTA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0373 488 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vvi2g0373 488 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Vvi2g0373 488 SUPERFAMILY Protein kinase-like (PK-like) 38 320 IPR011009 -
Vvi2g0373 488 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Vvi2g0373 488 Gene3D Tetratricopeptide repeat domain 380 488 IPR011990 GO:0005515
Vvi2g0373 488 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vvi2g0373 488 FunFam probable serine/threonine-protein kinase At4g35230 380 488 - -
Vvi2g0373 488 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0373 488 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vvi2g0373 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 19 486 IPR045845 GO:0004672|GO:0009742
Vvi2g0373 488 SUPERFAMILY TPR-like 386 476 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0373 Vvi-Chr2 3050570 3063613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0373 29 310 Glycoside Hydrolase AT3G07070 32.258 2.98e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi2g0373 PK_Tyr_Ser-Thr 3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0373 K14500 - vvi:100256502 981.859