Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0363 ATGGTTTTGGAGGACCCGAGTCTCATCCAACACATCAAAACTTCTTTTCTGGAGATTCCATACCCCATGCTGTCCAGGATATCTAATTCCAGAAAGATAAGAGAAGACAAAGACCCTGCTTCTGCAGAGCTTGATCATAATTTTCTCGACACCAACCTTAATCCAGCAGTTTTAGAAGTAGGTTCTCCAAATAACAGCTCAGATGGGTTTGAGCTGAATCAATTGGGAGAGGAATCGATTATGGTTGACTGCTTAAATGGTGGGGGAGCTTCTCAGGTACAAAGCTGGCAACTCTTGGAGGATGAATTCAGTAACTGTGTCCATAACTCAATGAACTCTAGTGACTGCATATCTCAGACCATCATGAATCCTGAAAAGGTTGTTCCTATTTCAAAGGGTGAAAAGGTTAATGATCATTGCCTGGTAGACCTTCAGGAATGCAATAACACCAAATTAACCTCATTGGATCTTCGGGATGATCTTCATTATCAGTGTATTCTTTCATCCCTTTTGAGCTCCAACCAGTTGATTTTGGGACCATGCTTTCGAAATTCCAATAAGGAGTCAAGCTTCGTTAGTTGGAAGAAAAGAGGATTGATGGGTACTCAGAAGCTGAACACTGGAACCCAACAAAAATTATTGAAGAAGGTGCTGTTTGAAGTTGCTCAAATGCATGGTGGTTGCTTAATGAGCTCCCGGGATAATAATGGAGATAACGATGAAATTTGGAGACCAGAGGCTGACGAAATCACTCTGAACCATGTGTTGTCCGAGAGGAAACGGAGGGAAAAAATAAATGAAAGGTTCTCGGTTCTCAGATCACTTGTTCCTTCTATTAACCAGGTCAACAAAGTGTCTGTACTTGATGACACCATAGAATACCTGAAAGAGCTCAAAAGAAGAGTTGAAGAGTTGGAATCTAGCAAGGAGTCAACAGAAATAGAGGCAAGAACAAGCAGGAGAACCCCAGATACTGCAGAGAGGACATCTGATAACTATGGCAACGACAGAGTTGGAAATGGCAAGAAACCTTTGTTGAACAAGAGGAAGGCTTGTGACATTGATGAAATGGAGCCTGATTCCAACCGGGTTTTACTGAAAGATGATTCAGCTGAAAATATAACAGTCAATATGAACGAGAAGGATATTCTAATCGAACTGAGGTGTCCATGGAGAGAGTGCTTGTTGCTTGAGATCATGGATGCTGTAAGCAATCTCCATTTAGATTCTCAGTCAGTTCAGTCAGCCAGCGTTGATGGAATTCTTTCTCTGACCATTAAATCAAAGTTTAAGGGATCATCATTTGCATCAGCAGAAACAATCAGACAAGCACTTCAGAGAGTTGTCCCAAAGTGTTGA 1359 0.415 MVLEDPSLIQHIKTSFLEIPYPMLSRISNSRKIREDKDPASAELDHNFLDTNLNPAVLEVGSPNNSSDGFELNQLGEESIMVDCLNGGGASQVQSWQLLEDEFSNCVHNSMNSSDCISQTIMNPEKVVPISKGEKVNDHCLVDLQECNNTKLTSLDLRDDLHYQCILSSLLSSNQLILGPCFRNSNKESSFVSWKKRGLMGTQKLNTGTQQKLLKKVLFEVAQMHGGCLMSSRDNNGDNDEIWRPEADEITLNHVLSERKRREKINERFSVLRSLVPSINQVNKVSVLDDTIEYLKELKRRVEELESSKESTEIEARTSRRTPDTAERTSDNYGNDRVGNGKKPLLNKRKACDIDEMEPDSNRVLLKDDSAENITVNMNEKDILIELRCPWRECLLLEIMDAVSNLHLDSQSVQSASVDGILSLTIKSKFKGSSFASAETIRQALQRVVPKC* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0363 452 MobiDBLite consensus disorder prediction 306 344 - -
Vvi2g0363 452 Gene3D - 244 315 IPR036638 GO:0046983
Vvi2g0363 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Vvi2g0363 452 Pfam Helix-loop-helix DNA-binding domain 253 298 IPR011598 GO:0046983
Vvi2g0363 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 249 317 IPR036638 GO:0046983
Vvi2g0363 452 MobiDBLite consensus disorder prediction 306 331 - -
Vvi2g0363 452 Coils Coil 288 322 - -
Vvi2g0363 452 SMART finulus 255 304 IPR011598 GO:0046983
Vvi2g0363 452 PANTHER TRANSCRIPTION FACTOR TT8 2 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0363 Vvi-Chr2 2943658 2945340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0363 2 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 43.376 9.79e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi2g0363 HLH 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0363 - - vvi:100258234 868.996