LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0356	ATGGAGGGGAAGGAAGAAGATGTTAAGCTTGGAGCCAACAAGTTCACAGAGAGGCAGCCGTTGGGCACAGCTGCTCAGACGGACAAGGACTACAAGGATCTACCACCAGCACCCTTGTTTGAGCCCGGGGAGTTGAAGTCATGGTCTTTTTACAGAGCCGGGATTGCTGAGTTCATGGCCACTTTCCTGTTTCTCTATATCACCATTTTGACTGTTATGGGTGTGAAAAAGTCACCCACCATGTGTGCCAGTGTTGGTATTCAGGGGATTGCTTGGGCTTTTGGTGGTATGATCTTTGCCCTTGTCTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCTGTGACCTTTGGTCTGCTACTGGCGAGGAAGCTGTCTCTTACCAGGGCAATTTTCTACATCATAATGCAGTGCCTTGGTGCCATCTGTGGGGCTGGTGTTGTTAAGGGTTTTGAGGGTTCCCAATCCTATGAGGTGTTGGGTGGTGGAGCTAACGTTGTGAATTCTGGCTACACCAAGGGTGATGGCCTTGGTGCTGAGATTGTTGGCACCTTCGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAGAGAAACGCCAGAGACTCTCACGTCCCTTGTTCTTGGTTCACTTGGCCACCATCCCCATCACAGGAACTGGCATTAACCCAGCCAGGAGTCTTGGAGCTGCTATCATCTTCAACAGAGAGCATGCATGGGATGACATGTGGATCTTCTGGGTGGGACCGTTCATTGGAGCTGCTCTTGCTGCCATGTACCAGCAGATAG	798	0.5063	MEGKEEDVKLGANKFTERQPLGTAAQTDKDYKDLPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITILTVMGVKKSPTMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEGSQSYEVLGGGANVVNSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPCSWFTWPPSPSQELALTQPGVLELLSSSTESMHGMTCGSSGWDRSLELLLLPCTSR*	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0356	265	Gene3D	Glycerol uptake facilitator protein.	37	215	IPR023271	-
	Vvi2g0356	265	ProSitePatterns	MIP family signature.	112	120	IPR022357	-
	Vvi2g0356	265	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	13	210	IPR034294	-
	Vvi2g0356	265	PRINTS	Major intrinsic protein family signature	131	150	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi2g0356	265	PRINTS	Major intrinsic protein family signature	94	118	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi2g0356	265	PRINTS	Major intrinsic protein family signature	52	71	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi2g0356	265	PRINTS	Major intrinsic protein family signature	181	199	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi2g0356	265	Pfam	Major intrinsic protein	44	209	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi2g0356	265	SUPERFAMILY	Aquaporin-like	44	209	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0356	Vvi-Chr2	2890855	2893666	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0356	1	209	Major Intrinsic Protein MIP	AT2G45960	85.646	5.68e-132	374

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0356	K09872		-	vvi:100233001	420.239