LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0354	ATGCCTTCATGGTGGGGGAAATCTTCATCCAAAGAAGTAAAGAAGAAGGAAAACCGGGAAAGTTTCATTGATTCAATACACCGGAAATTCAGGACTGTATCTGAAGAGAAGTGCAACAATAGATCAGGAGCTTCCCAAAGACACTGTGGTGACACTGTCTCAGAGAAGGAATCTCGATCCAGAGCACAATCAAGATCACCATCTCCCTCCACAAAAGTATCACGCTGTCAAAGTTTTGCAGAAAGGCCTCATGCCCAACCACTTCCACTCCCTGGACCGCACCTTACGAGTGTAGTGCGTACTGACTCTGGAATCAATGCATCAAAGAAACAAGGATTGGTTGAAGGCTCCAAGACACAGATGGTTTTGCCCCTGCCAAGACCTGGATATGTTGCAAACAGGCTAGATCCTACAGATGCTGAGGGGGATCTAGCCACTGCTTCTGTGTTTAGTTATAGTTCCATTGATAGTGAAGATCCATCTGAGTCACGCCTTCTCAGCCCCCAGGCATCTGATTATGAGAATGGAAACAGAACCACTATGAACAGCCCTTCCAGCGTAATGCACAAGGATCAGTCTCCTGTTCTCACCCCAAGGAAGCCAAGAGAAGCATTGAGGCCAGCTAATCTTTTGTTAAACAATCAGATTCACTCTACATCACCTAAATGGGTACCTTTAAGCACTCATGTGCCAAATTTTCCAGTTCCTCAGAATGGCGCTTTCTGTAGTGCTCCAGACAGCTCGATGTCAAGTCCTTCTAGAAGTCCAATGAGATTATTTAGCCCTGAGCAAGTCATGAATTCTAGTTTCTGGACGGGAAAGCCTTATGCTGATATAGCTTTGCTTGGATCTGGACACTGTTCTAGTCCAGGTTCAGGTCACAATTCTGGACATAATTCAATAGGAGGAGATATGTCAGGACAGCTGTTTTGGCCGCACAGCAGGTGTAGCCCTGAGTGTTCTCCAATACCAAGTCCCAGAATGACAAGCCCTGGTCCCAGCTCCAGAATACAGAGTGGTGCTGTCACCCCTCTGCATCCACGAGCTGGAGCAGCTGCTGCAGAGTCTCCTACCAACCGACCTGATGATGGAAAGCAACAAAGCCACCGATTGCCCCTTCCACCGATAACAATTTCTAATTCTTGTCCTTTTTCTCCTACATATTCTACATCAACAACTCCCTCAGTACCACGAAGTCCTGGTAGGGCGGAAAACCCAATCAGCCCTGGATCACGCTGGAAGAAGGGTCGGCTCTTAGGGAGAGGCACATTTGGGCATGTATATCTTGGGTTTAATAGTGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACAGTGGATGACAAACTCTACATATATTTGGAATATGTATCTGGTGGTTCCATATATAAACTTCTTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGGGACATCAAAGGAGCAAATATACTGGTGGATCCCAATGGCCGTGTGAAATTGGCAGATTTTGGAATGGCAAAGCATATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGTATGAAGGGGTTGCTGCTATGTTTAAGATTGGTAACAGTAAAGAACTTCCCACAATACCTGATCATCTCTCAGAGGAGGGCAAGGACTTTGTAAGGCAGTGCTTGCAACGCAACCCATTGCATCGTCCCACAGCTGCTTGGCTATTGGAGCACCCTTTTGTTAGAAATGCTGCGCCTCTGGAAAGACCTAGTCTTAGTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGCCCTCTTCTGCATTCAAGATCACCACAACATATGAGTGGGAGGATGTCTCCCTCTCCCATATCCAGTCCTCGCACCACATCTGGTTCATCCACGCCTCTCAGTGGGGGTAGTGGTGCCATACCTTTTCATCATCCAAAGCCAATAAACTACATGCATGAAGGCATCGGAATCATCCCAAGATCCCAGAGCAGTCTCTATGCTAATGGCAGCAGCTCCTACCAAGATCCCCAGCCTGATCTTTTTCGAGGGATGCCACAAGTATCTCATGTTTTCCGGGAGATGATTTCATCTGAAAGTGGCAGTTTTGGAAATCAGTTTGGACGACCTGTCCATGGAGACCCCAGGGACCTGTGTGATGCACAATCAGTCTTGTCTGATCGCGTAGCTCAGCAGCTTTTGAGGGACCATACAAACTTGCACCTTTCTCTGGACCTAAATCCTGGTTCTCCTATGCTCACGCGCACTAATGGAATTTAA	2706	0.4642	MPSWWGKSSSKEVKKKENRESFIDSIHRKFRTVSEEKCNNRSGASQRHCGDTVSEKESRSRAQSRSPSPSTKVSRCQSFAERPHAQPLPLPGPHLTSVVRTDSGINASKKQGLVEGSKTQMVLPLPRPGYVANRLDPTDAEGDLATASVFSYSSIDSEDPSESRLLSPQASDYENGNRTTMNSPSSVMHKDQSPVLTPRKPREALRPANLLLNNQIHSTSPKWVPLSTHVPNFPVPQNGAFCSAPDSSMSSPSRSPMRLFSPEQVMNSSFWTGKPYADIALLGSGHCSSPGSGHNSGHNSIGGDMSGQLFWPHSRCSPECSPIPSPRMTSPGPSSRIQSGAVTPLHPRAGAAAAESPTNRPDDGKQQSHRLPLPPITISNSCPFSPTYSTSTTPSVPRSPGRAENPISPGSRWKKGRLLGRGTFGHVYLGFNSESGEMCAMKEVTLFSDDAKSKESAQQLGQEISLLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQLGEIAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSLKGSPYWMAPEVIKNSNGCNLAVDLWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEEGKDFVRQCLQRNPLHRPTAAWLLEHPFVRNAAPLERPSLSSELEPPPAVTNAVRSMAIGHTRNVLESEGVAIHQSRCSKTGSGSSDTHTPRNLSSPVSPIGSPLLHSRSPQHMSGRMSPSPISSPRTTSGSSTPLSGGSGAIPFHHPKPINYMHEGIGIIPRSQSSLYANGSSSYQDPQPDLFRGMPQVSHVFREMISSESGSFGNQFGRPVHGDPRDLCDAQSVLSDRVAQQLLRDHTNLHLSLDLNPGSPMLTRTNGI*	902

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	372	399	-	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	153	201	-	-
	Vvi2g0354	901	ProSitePatterns	Protein kinases ATP-binding region signature.	419	442	IPR017441	GO:0005524
	Vvi2g0354	901	ProSiteProfiles	Protein kinase domain profile.	413	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	99	115	-	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	714	779	-	-
	Vvi2g0354	901	SUPERFAMILY	Protein kinase-like (PK-like)	411	760	IPR011009	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	63	77	-	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	153	192	-	-
	Vvi2g0354	901	FunFam	Mitogen-activated protein kinase kinase kinase	411	693	-	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	706	789	-	-
	Vvi2g0354	901	SMART	serkin_6	413	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	33	119	-	-
	Vvi2g0354	901	MobiDBLite	consensus disorder prediction	316	414	-	-
	Vvi2g0354	901	Gene3D	Transferase(Phosphotransferase) domain 1	411	689	-	-
	Vvi2g0354	901	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	61	722	-	-
	Vvi2g0354	901	Pfam	Protein kinase domain	414	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi2g0354	901	CDD	STKc_MEKK1_plant	412	669	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0354	Vvi-Chr2	2876754	2882840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0354	4	891	MAP Kinase Kinase Kinase	AT1G63700	64.373	0.0	1006

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vvi2g0354		Pkinase	1.4e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0354	K20717		-	vvi:100263296	1689.09