Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0350 ATGGACAAAACGGCAATTGCCCTTGAAGCTATCAGCAGGGGAATTGTTGATCTGGAAAACATCCCTCTTGAAGAAGTTTTCGAGAAATTAAAATGTGCACGAGAAGGTCTTAGTTTAGATGAGGTTGACAAGCGATTGACTGTGTTTGGGTACAACAGACTTGAAGAGAAAAAGGAAAATAAAATTCTGAAATTTCTGGGATTTATGTGGAATCCTCTCTCATGGGTTATGGAAGCAGCAGCAATCATGGCCATTTCTGTTGCAGATTTAGGGAATGAGGCTGTAGGTTACCATGACGTTTTTGGCATTCTGTTTCTGCTTCTTGTCGATTCAGGCATCAGCTTTGTATTTGAAAGCTATGATGACAATGAAGTGGTGGCCCTTATGGCTAGGCTGGCTCCAAAAGCAAAGGTTTTACGAGATGGCAAATGGATTGAGGAACATGCTTCTGTGTTGGTTCCTGGAGACATTATCAGTATCAAACTGGGAGATATCATCCCTGCTGATGCATGTTTACTTGAAGGAGATCCTCTGAAAATTGATCAGTCTGCTCTCACAGGAGAGTCATTCCCATTAACAAAACATACTGGTGAGGGAGTTTACTCTGGTTCAACATGTATGCAAGGTGAAACTGAAGCAGTGGTTACTGCAACTGGAGTGCATACTTTCTTTGGAAAGGCAGCTCATCTTGTGGAAACAAGTACACATGTTGGGCATTATCAGCAGGTTTTAACAGTAATTGGAAACTTTTGCATTTGCTCAATTGCCATCGGAATGTTGATTGAGATCATCATAATATACTGGGTCCAACACAGACACTATCATTCCGGAATAGGCAACCTGGTTGTCCTACTCATTGGCGGTATCCCAATTGCAATTCCAGCAGTTGTGTCTCTTATCATGTCCGTGGGTTTTCGTCACCTAACTCAGCAGGGTGTTATAACTAAGAGAATGGCAGCTATTGAGGACATGGCTGGGATGGATGTCCTCTGCAGTAATAAGACAGGAACTTTAACTCTTAACAAACTTACAATAGACAAGAATATGATCGAGGTTTTTGCCAAAGGTTTTGACCAGGAAATGGTTGTATTGATGGCTGCAAGAGCTTCAAGATTGGAGAATCAAGATGCTATTGATGCTGCAATTGTTTCAATGCTGGCTGATCCTAAGGAGGCACGAGCAGGAATTACAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAGAAGACAGCTCTTACATACATTAACAGTGCTGGTAAAATGCACAGGGCTAGCAAGGGTGCGCCAGAGCAGATTCTCAATCTGGCACATAACAAATCAGATATTGAAAGAAGAGTGCAATCAATAATCGATAAATTTGCAGAGCGTGGGATTGGATCCCTTGCAGTTGCATGTCAGGAAGTACCTGCTGGCACTGAAGACAGTCCTGGTGGGCCCTGGGAATTTGTTGGTCTTCTCCCACTCTTTGACCCACCTCGCCATGACAGTGCTGAAGCAATGAGAAGAGCTCTAGATCTCGGAGTAAGTGTTAAGATGATAACAGGTGACCAATTGGCCATTGCTAAGGAGACTGGGAGATGGCATGGAATGGGCACAAACATGTACCCTTCATCATCTTTGCTTGGAAATGACAAGGACCAGTCTATTGCAACCTTACCAGTTGATGAACTTATTGAAAAAGCTGATGGCTTTTCTGGTGTCTTTCCTGAACATAAGTATAAGATTGTGATGCGATTACAATCAAGAAAGCACATCGTTGGGATGACAGGAAATGGAGTCACTGATGCACCTGCAATTAAGAAAGCAGACATAGGAATTGCTGCGGCAGATTCAACAGATGCTGCTCGAGGCACTTGTGACATAGTACTGACAGAGCCTGGGCTAAGTGTAATCATTAGTGCTGTATTAACCAGCCGCTCAATCTTTCAAAGAATGAAGAACGTCATGACATATGCAGTATCTATCACAGTGCGTATGGTTCTAGGTTTTCTGGTGCTGACTGCATTCTGGAAGTTCGATTTCCCTCTTTACATGGTTCTTATGATTGCCATTCTTAATCATACTATTATGATTGCTACAGACGATGACAGGGTGAAGCCATCTCCAGTTCCTGACAGTTGGAAGCTTAGTGAAATTTTTGTGACTGGGATTGTCACAGGAACTTACCTTGCCCTGATGACAGTTGTATTCTTCTGGGCAGCTTATGAAACCAGTTTCTTTGCGAAGAACTTCCACGTAACAAACTTCAACAAGCATCAGTACAATCTCTCAGATGAGAAAACCTTAGACCATCTGCATGCACAGTTGGCATCTGCAGTGTACCTTCAAGTTAACACCATCAGCCAGGCTTTAATATTTGTGACTCGCTCCAGGGGCTGGTCGTTCATGCAAAGAGAAAGACCTCGTCTTCGTCTTGTTTCTGCCTTTGTCAGCATTCAATTGGCGGCAACAGTGATATCTGCCACAGCATCCTTGGAATTTGCTGGGATTAAAAAGATTGGTTGGGGTTGGACTGGTGTTATTTGGCTATACAACATTCTAACCTATATGTTGCTTGATCCTATCAAATTTGGTGTGCAATATGCTCTTAGTGGGAGAGCTTAG 2607 0.4288 MDKTAIALEAISRGIVDLENIPLEEVFEKLKCAREGLSLDEVDKRLTVFGYNRLEEKKENKILKFLGFMWNPLSWVMEAAAIMAISVADLGNEAVGYHDVFGILFLLLVDSGISFVFESYDDNEVVALMARLAPKAKVLRDGKWIEEHASVLVPGDIISIKLGDIIPADACLLEGDPLKIDQSALTGESFPLTKHTGEGVYSGSTCMQGETEAVVTATGVHTFFGKAAHLVETSTHVGHYQQVLTVIGNFCICSIAIGMLIEIIIIYWVQHRHYHSGIGNLVVLLIGGIPIAIPAVVSLIMSVGFRHLTQQGVITKRMAAIEDMAGMDVLCSNKTGTLTLNKLTIDKNMIEVFAKGFDQEMVVLMAARASRLENQDAIDAAIVSMLADPKEARAGITEVHFLPFNPTDKKTALTYINSAGKMHRASKGAPEQILNLAHNKSDIERRVQSIIDKFAERGIGSLAVACQEVPAGTEDSPGGPWEFVGLLPLFDPPRHDSAEAMRRALDLGVSVKMITGDQLAIAKETGRWHGMGTNMYPSSSLLGNDKDQSIATLPVDELIEKADGFSGVFPEHKYKIVMRLQSRKHIVGMTGNGVTDAPAIKKADIGIAAADSTDAARGTCDIVLTEPGLSVIISAVLTSRSIFQRMKNVMTYAVSITVRMVLGFLVLTAFWKFDFPLYMVLMIAILNHTIMIATDDDRVKPSPVPDSWKLSEIFVTGIVTGTYLALMTVVFFWAAYETSFFAKNFHVTNFNKHQYNLSDEKTLDHLHAQLASAVYLQVNTISQALIFVTRSRGWSFMQRERPRLRLVSAFVSIQLAATVISATASLEFAGIKKIGWGWTGVIWLYNILTYMLLDPIKFGVQYALSGRA* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0350 868 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 822 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vvi2g0350 868 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 862 IPR023298 -
Vvi2g0350 868 Gene3D - 97 832 - -
Vvi2g0350 868 FunFam Plasma membrane ATPase 134 218 - -
Vvi2g0350 868 Gene3D - 343 490 IPR023299 GO:0000166
Vvi2g0350 868 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Vvi2g0350 868 SUPERFAMILY HAD-like 327 637 IPR036412 -
Vvi2g0350 868 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Vvi2g0350 868 Gene3D - 134 218 - -
Vvi2g0350 868 FunFam Plasma membrane ATPase 483 638 - -
Vvi2g0350 868 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Vvi2g0350 868 CDD P-type_ATPase_H 36 858 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vvi2g0350 868 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Vvi2g0350 868 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Vvi2g0350 868 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Vvi2g0350 868 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Vvi2g0350 868 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Vvi2g0350 868 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Vvi2g0350 868 PANTHER CALCIUM-TRANSPORTING ATPASE 19 865 - -
Vvi2g0350 868 Gene3D - 328 627 IPR023214 -
Vvi2g0350 868 FunFam Plasma membrane ATPase 343 490 - -
Vvi2g0350 868 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 PRINTS H+-transporting ATPase (proton pump) signature 775 796 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 NCBIfam HAD-IC family P-type ATPase 565 670 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 NCBIfam HAD-IC family P-type ATPase 103 538 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0350 868 Pfam E1-E2 ATPase 132 310 - -
Vvi2g0350 868 Pfam haloacid dehalogenase-like hydrolase 329 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0350 Vvi-Chr2 2833959 2842002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0350 7 868 Primary Pumps ATPases AT3G60330 70.534 0.0 1250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0350 K01535 - vvi:100246127 1677.92