Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0349 ATGGATGCATCCACGGTTTTATTGCTCTTAGCGATAATTACGGCTTATTTAATATGGTTCAGATCAATCACACGGTCTCTGAAGGGTCCACGTGTCTGGCCGGTAGTAGGTAGTCTCCCGCTCCTTATTCAGAACGCCAATCGCATGCACGAGTGGATCGCCGAGAACCTCCGCTCATGCGGCGGCACGTACCAGACCTGCATTTGCCCAATTCCGTTTTTAGCCCGGAAGCAGGGTCTCGTGACCGTCACGTGTGACCCGAAGAATCTGGAGCATATTCTCAAGATCCGGTTCGATAATTACCCCAAGGGTCCGACATGGCAGGCAGTGTTCCATGACCTGCTCGGTGAGGGGATCTTCAATTCTGATGGCGAAACGTGGCGGTTCCAGCGTAAGACCGCCGCACTGGAATTCACCACCCGGACTCTGCGCCAAGCCATGGCTCGCTGGGTCACCCGCGCCATTAAGCTGAGGTTTTGCCCGATACTGAAGAAGGCTCAACTCGAGGGCAAGCCGGTTGATCTCCAAGATCTGCTGCTTCGGCTCACTTTTGACAACATCTGCGGCTTGGCTTTTGGGAAGGACCCGCAGACGCTGGCTCCGGGGCTCCCCGAGAACAGTTTCGCTACGGCTTTCGACCGAGCCACGGAAGCCACCCTGCAGCGCTTTATTCTGCCTGAGTTTATATGGAAATTGAAGAAATGGCTCCGGCTTGGGATGGAAGCCAGCTTGACCCACAGCCTGGGGCACGTGGACAAGTACCTGTCCGACGTCATCAGCACACGCAAGCTCGAGTTGGTGAGTCAGCAGCAAGGTGGGTCCCCTCACGATGACCTCCTCTCACGGTTCATGAAGAAAAAGGAAGCCTACTCTGACAATTTCCTCCAACACGTGGCGCTCAACTTCATCCTAGCTGGACGTGACACGTCATCAGTAGCTCTGAGCTGGTTCTTCTGGTTGGTCATTCAAAACCCAAGGGTGGAAGAGAAAATTTTGACCGAAATCTGCACCGTTCTAATGGAGACACGTGGCAGTGACACCTCAAAGTGGGTTGAAGACCCCTTGGTATTTGAAGAAGTTGACCGATTGATATACCTTAAGGCAGCGTTATCTGAAACCCTTAGGCTATACCCCTCAGTTCCAGAAGACTCAAAGCATGTAGTCGTCGACGACGTCCTGCCCGACGGCACATTCGTTCCGGCAGGATCGGCAATCACCTATTCCATATACTCGACCGGACGAATGAAGTTCATCTGGGGCGAAGACTGCCTAGAATTCCGGCCAGAAAGATGGTTATCAGCAGATGGTAAAAAAATTGAGCTACAAGATTCTTTCAAATTTGTCGCCTTCAATGCAGGTCCAAGGATTTGCCTCGGCAAGGACTTAGCTTATCTACAAATGAAGTCCATAGCAGCGGCGGTTTTGCTCCGCCACCGCCTCACGGTGGCACCGGGGCACAGGGTGGAGCAGAAAATGTCACTGACATTGTTCATGAAGTATGGCCTCAAAGTGAACGTGCAACCTAGAGACTTGACCCCAATTTTAGCCAACATTCCCAAGGCCAAACCCAACACTAAGGTCAATGGTGCTAAGCGAATGAAGCAGAAAGGAAAGAAAATGGAATATTGA 1629 0.52 MDASTVLLLLAIITAYLIWFRSITRSLKGPRVWPVVGSLPLLIQNANRMHEWIAENLRSCGGTYQTCICPIPFLARKQGLVTVTCDPKNLEHILKIRFDNYPKGPTWQAVFHDLLGEGIFNSDGETWRFQRKTAALEFTTRTLRQAMARWVTRAIKLRFCPILKKAQLEGKPVDLQDLLLRLTFDNICGLAFGKDPQTLAPGLPENSFATAFDRATEATLQRFILPEFIWKLKKWLRLGMEASLTHSLGHVDKYLSDVISTRKLELVSQQQGGSPHDDLLSRFMKKKEAYSDNFLQHVALNFILAGRDTSSVALSWFFWLVIQNPRVEEKILTEICTVLMETRGSDTSKWVEDPLVFEEVDRLIYLKAALSETLRLYPSVPEDSKHVVVDDVLPDGTFVPAGSAITYSIYSTGRMKFIWGEDCLEFRPERWLSADGKKIELQDSFKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAPGHRVEQKMSLTLFMKYGLKVNVQPRDLTPILANIPKAKPNTKVNGAKRMKQKGKKMEY* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0349 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Vvi2g0349 542 CDD CYP86A 67 502 - -
Vvi2g0349 542 Pfam Cytochrome P450 28 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PANTHER CYTOCHROME P450 21 504 - -
Vvi2g0349 542 Gene3D Cytochrome P450 21 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 FunFam Cytochrome P450 21 512 - -
Vvi2g0349 542 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g0349 542 SUPERFAMILY Cytochrome P450 19 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0349 Vvi-Chr2 2829272 2833459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0349 1 529 Cytochrome P450 AT2G45970 75.094 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0349 K15398 K20544 vvi:100247907 1066.6