Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0343 ATGGCGGAAGCAGAAACTGGTACGCCGACAGCGTCGGCGCCGGCGACGCCTGGAACACCCGGGGGCCCATTGTTTTCGTCGCTCCGAGTCGATTCGCTGTCCTACGATCGTAAGTCAATGCCGCGATGCAAGTGCCTGCCGGTTGGGGCCGCCTCGTGGGCTCCATCTCCTACCTGTTTCACAGATTTTCCTGCGCCCGACGTCTCTCTCACCCGGAAGCTTGGAGCAGAGTTTGTGGGAACGTTCATCTTGATATTTGCAGCGACGGCGGGACCCATCGTGAACCAGAAGTACAGTGGGGTGGAGACTCTGATAGGGAATGCGGCATGCGCCGGGCTTGCGGTGATGATAGTGATTCTTTCCACAGGCCATATCTCAGGAGCTCACCTCAACCCCTCCCTCACGATTGCCTTCGCCGCGCTTCGTCACTTCCCGTGGGTGCAAGTTCCGGCCTATATCGCAGCACAAGTTTCAGCATCCATCTGCGCTTCCTTCGCTCTCAAGGCTGTTTTCCACCCATTCATGTCTGGTGGTGTCACCGTCCCTTCGGTCAGCATTGGGCAGGCCTTCGCCCTTGAGTTCCTTATCACTTTCAATCTCTTGTTCGTTGTCACCGCCGTCGCCACGGATACTCGAGCTGTGGGGGAATTGGCTGGTATAGCGGTTGGAGCTACTGTTATGCTGAACATTCTTGTGGCAGGGCCGTCGAGTGGTGGTTCGATGAATCCAGTGAGGACTCTGGGGCCGGCCGTGGCAGCAGGGAATTACAGGGCGATATGGATATATCTGGTGGCTCCAACGCTGGGGGCGGTGGCGGGGGCAGCTATCTACACAGCTGTCAAACTCCGAGCGGATGAGGGTGAGCAACCTCGCCAGGTCAGGAGCTTCCGTCGCTAG 897 0.5831 MAEAETGTPTASAPATPGTPGGPLFSSLRVDSLSYDRKSMPRCKCLPVGAASWAPSPTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYSGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKAVFHPFMSGGVTVPSVSIGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGAVAGAAIYTAVKLRADEGEQPRQVRSFRR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0343 298 Gene3D Glycerol uptake facilitator protein. 65 293 IPR023271 -
Vvi2g0343 298 PANTHER AQUAPORIN NIP2-1 56 285 IPR034294 -
Vvi2g0343 298 FunFam Aquaporin NIP2-1 60 292 - -
Vvi2g0343 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 SUPERFAMILY Aquaporin-like 69 283 IPR023271 -
Vvi2g0343 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g0343 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Vvi2g0343 298 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0343 Vvi-Chr2 2788751 2791186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0343 24 298 Major Intrinsic Protein MIP AT4G10380 83.333 6.04e-169 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0343 K09874 - vvi:100265051 555.829