Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0341 ATGGCACCCTCCAATTTCACCATTAACAAATCAGAGAGAAGGGTTTCAAACCCACACGATCCTGGAACCGCTAGTGGTCTGTTTGTCTGTGGTTGTTGGTCCTGTTGGCGCATCCTTTCTATTATCTTATTAACTTTCCCTTATCAGCTCGCCTTCTGCGTGGCTTCCGACTCCCCACCCACCCGTGCCGCTCCACCGACGCCACTTTTTAAAACCAGAGGGGGAGGAGACACCCAGAGCACCGACACCCTCGCTGACCCCAGAATCGTAGCAGCTCTCTGCGTGTCAGCTGCCTTTCTCATCTTGCTCTTCGTCATGGGTTTCCTCAAGTTTCTCAGATTCAAACTGAGACGCAGGCGGAATCGAGTTGTTATCGAAGACCATATGGGTGGATGTGAGTCAGGGATCTCCGTCGTTCCGAATGAGCCTGACAAGAAGAATGGTTCCGTGAAGAGATTCAGTAGGGAGGAGATAGAGAGGGTGACCATGAATTTCTCACAGACACGGGTAATCGGATCCGGAGGGTTTAGCACCGTCTATCTGGCTCACTTCCCAGGTTCGACCATGGCCGCAGTCAAGATCCACAATGGCGGAGAGCGTCTCAACAGAGTATTCAAGCAGGAACTGGAGATCCTGCTCCACCTTGACCATGACAACATTGTCAAGCTTCTGGGTTACGGCGATGATCGAGAAGAAGGGGTCTTGGTATTTGAGCATGTTCCAAAGGGGAGCTTGCAAGAGATGCTCCATGACAGTACCGGAGCAAAGGAGAACTCGCCGCTATCATGGAAAAACCGAATGGCCATAGCCTTCCAGCTTGCCGAAGCTATTGAATATCTACATGAAAAATGTGCTCTCCCAATCGTTCACGGCGACATCAAAGCCTCAAACATCCTCCTGGATGAGCACCTCAACTGCAAGCTCTGCGATTTCGGGTCTGCCAAGATGGGATTTTCTTCCACGGTGCTGCCGCCCTCTTCTTCTCGGATGAACCAAGTCATGATGATGGGGTCTCCTGGCTACGTTGATCCTCACTACCTGAGAACCGGAATCCCCTCAAAAAAGAACGATATTTATAGCTTTGGAGTCATCCTTCTGGAACTGCTCACTGGGATGGATGCCTTCTGTTCAGAGCGGGAGCAGCCGCTGACATCTATTGCCGGGCCCATTCTCAGGGATGCCAGCCAGGTGGGCAAAGTGGTAGATCCAGGACTTGGCGGCTACTTTGACTTGGAAGAAGCCAAAGTCATGGCTTCCATGGCAGGACTCTGTCTGGGTCCTTCACCTACCCTAAGGCCCTCCGCCTCTGACATCCTTCAAACAATGAAACACAAAATCTCTTCCATCTCCTTCCTATTCTCACCTCACCATTTGAAATTGTAA 1383 0.5112 MAPSNFTINKSERRVSNPHDPGTASGLFVCGCWSCWRILSIILLTFPYQLAFCVASDSPPTRAAPPTPLFKTRGGGDTQSTDTLADPRIVAALCVSAAFLILLFVMGFLKFLRFKLRRRRNRVVIEDHMGGCESGISVVPNEPDKKNGSVKRFSREEIERVTMNFSQTRVIGSGGFSTVYLAHFPGSTMAAVKIHNGGERLNRVFKQELEILLHLDHDNIVKLLGYGDDREEGVLVFEHVPKGSLQEMLHDSTGAKENSPLSWKNRMAIAFQLAEAIEYLHEKCALPIVHGDIKASNILLDEHLNCKLCDFGSAKMGFSSTVLPPSSSRMNQVMMMGSPGYVDPHYLRTGIPSKKNDIYSFGVILLELLTGMDAFCSEREQPLTSIAGPILRDASQVGKVVDPGLGGYFDLEEAKVMASMAGLCLGPSPTLRPSASDILQTMKHKISSISFLFSPHHLKL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0341 460 SMART serkin_6 165 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0341 460 SUPERFAMILY Protein kinase-like (PK-like) 148 442 IPR011009 -
Vvi2g0341 460 Pfam Protein kinase domain 166 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0341 460 Gene3D Phosphorylase Kinase; domain 1 138 239 - -
Vvi2g0341 460 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Vvi2g0341 460 MobiDBLite consensus disorder prediction 58 79 - -
Vvi2g0341 460 PANTHER OS01G0253100 PROTEIN 142 445 - -
Vvi2g0341 460 Gene3D Transferase(Phosphotransferase) domain 1 240 450 - -
Vvi2g0341 460 FunFam Serine/threonine-protein kinase-like protein At5g23170 240 453 - -
Vvi2g0341 460 ProSiteProfiles Protein kinase domain profile. 165 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0341 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0341 Vvi-Chr2 2774777 2776263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0341 153 452 Receptor kinase-like Gene Family AT1G33260 51.582 1.17e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XIII Vvi2g0341 Pkinase 4.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0341 - - vvi:100258149 906.36