Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0339 ATGCAGCAAGGAGGGTCTCAATATGGAGTGTCATCGGAGATGACTCCCTTCGCTGCGACTACCACTACCACTAGTACAAGAACCCACGTCTTGGGAGGTGCCGACCAGCAGCAGCAGCAGCTGAAATTGGGGGATCCAACACTTGCAGTGGCAGAAGAGGCCTCCCCCATCAGCAGCCGTCCTCCAGCTCATTCGTCTGCTGGGAATTTCGATGAGTTCTTGCCAGTGGGCGGTGGATTGCCGGATGAGGATGCTCTCGCCGCCGGGGATGAAGGCGATCGAGGGGGCGTTGCAAGTGGCAACAGGTGGCCGCGTCAAGAGACTTTAGCCCTTCTCAAGATTAGGTCGGAGATGGATGTGGCTTTCCGTGACGCCACCCTCAAAGGCCCTCTCTGGGAAGATGTCTCCAGGAAACTAGCAGAGCTGGGATACTCGAGAAGTGCCAAGAAGTGTAAGGAGAAGTTTGAAAACGTTCACAAATACTACAAAAGAACAAAGGAAGGGCGGGCTGGTAGGCAAGATGGAAAAAGCTACAGGTTTTTCAGTCAGCTTGAGGCTCTACACAGCACCGCTACCAGCAACGTGTCAGCTGCTCCGGCAACGCCTTTGACAGCCGTCATCGCCACCACCACCAATACTACTACTTTCCCGAATACAAACACAGTCTCACCTGCTACCAACTTGATTGTCGCTCCTATCTCTATCGGGATCGGCACCAGCAACCCTATGCCAGTTTCATCTGTTAGGATTCCCTCTGCAAGCCCTTCTACTATGGGTGCCTCCCCGATGTTTCCTCCTGATCTGAGCTCCGGAATGATTACCGCCCCTTCTGGATCCGCTGCCGCTACTGCCCCGGCTGCTGCACCGACACACACTGCTCTAGGGATCAGCTTCTCATCTAATACGTCTTCCTCTTCTTCTGGTTCGGATGATGACGAGCAGGAGGATGAAGATATATTGCAAGGGGAGCCGTCCAACGCAGATAGCAGTCGCTTCCTCCGTAAACGGAAAAGGGGTTCATCGAGAGGGAGTAGCAATAGCCGTCGGATGATGGATTTCTTCGAAAGTCTAATGAAACAGGTGATGGAGAAGCAGGAGGTGATGCAGCAAAGGTTTCTAGAGACCATAGAGAAGAGAGAACAAGACAGGATGATCAGAGAAGAGGCTTGGAAGAGACAGGAGATGGCCAGACTGTCCCGCGAGCATGATCTCATGGCGCAGGAGCGGGCTCTCTCTGCCTCTAGGGATGCGGCCATCATCGCTTTTCTACAGAAAATCACCGGTCAGACCATCCAATTACCACCGCCGGTAACCATTCCAGCAGTTCCGCCGCCAGCCCCACCGGCACCTGTCCCACCTCCAGCACCACCAACACAACACCATCACCACCATCAACCACAACCACAACCACAACAACAACAACAACACCAACATCATCATCATCATCATCAACAACAGCACCTTCACCATCACCACCAATCTCAAAGTACTCAAGTGGTGAGGCATCAACCACCCATTTCCTCAGAAGTAGTGATGGCTATACCAGAACAACAGGTACCACCCCAGGACATCAGTAGTGGTGGTGGGAGCTTAGAGTCGAGCTCATCGAGGTGGCCCAAAACGGAAGTTCTTGCATTAATAAACTTGAGGAGCGGACTGGACTCCAGGTACCAAGAGGCAGGACCAAAGGGTCCTCTTTGGGAAGAAATCTCAGCAGGAATGCAACAGATGGGGTACAAAAGGAGTGCCAAGAGATGCAAGGAAAAATGGGAGAATATCAATAAGTACTTCAAGAAGGTGAAGGAAAGCAACAAGAAACGCCCCGAGGATGCCAAGACTTGCCCTTACTTTCATCAACTAGATGCACTCTACAGGAAAAAGCTACTGGGAAGCACTAGTGGCAGTGGTGGCAGTGGTGGCAGTACTTATGTTAACCCCAATAGGCCAGAAGAGCAGCAGCAGCAGCAGCCGCCGCCTCAACATGAGAGCGCAAAATTGGATCCAATTCCAACTCCATATTCTCAGGATAGAGGTGATGTTCCAGCGATCATGCCACCACCAATAACCACCTCACAGGCTACTGAATCAGAAAACAAAAATGGAGGTAGCAGCGATGAACAAACAAACAATGGAGGTCTGCCAGGGAGCCTCTTTGGAGAAGGAAGCAGCACTCCTGGGGGAGGAGCTAAGAAGACATTGTGA 2202 0.52 MQQGGSQYGVSSEMTPFAATTTTTSTRTHVLGGADQQQQQLKLGDPTLAVAEEASPISSRPPAHSSAGNFDEFLPVGGGLPDEDALAAGDEGDRGGVASGNRWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYSRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFSQLEALHSTATSNVSAAPATPLTAVIATTTNTTTFPNTNTVSPATNLIVAPISIGIGTSNPMPVSSVRIPSASPSTMGASPMFPPDLSSGMITAPSGSAAATAPAAAPTHTALGISFSSNTSSSSSGSDDDEQEDEDILQGEPSNADSSRFLRKRKRGSSRGSSNSRRMMDFFESLMKQVMEKQEVMQQRFLETIEKREQDRMIREEAWKRQEMARLSREHDLMAQERALSASRDAAIIAFLQKITGQTIQLPPPVTIPAVPPPAPPAPVPPPAPPTQHHHHHQPQPQPQQQQQHQHHHHHHQQQHLHHHHQSQSTQVVRHQPPISSEVVMAIPEQQVPPQDISSGGGSLESSSSRWPKTEVLALINLRSGLDSRYQEAGPKGPLWEEISAGMQQMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALYRKKLLGSTSGSGGSGGSTYVNPNRPEEQQQQQPPPQHESAKLDPIPTPYSQDRGDVPAIMPPPITTSQATESENKNGGSSDEQTNNGGLPGSLFGEGSSTPGGGAKKTL* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0339 733 MobiDBLite consensus disorder prediction 1 101 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 687 717 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 475 496 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 436 502 - -
Vvi2g0339 733 FunFam Trihelix transcription factor GT-2 538 599 - -
Vvi2g0339 733 ProSiteProfiles Myb-like domain profile. 101 159 IPR001005 -
Vvi2g0339 733 PANTHER FI21293P1 52 664 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 295 349 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 436 463 - -
Vvi2g0339 733 ProSiteProfiles Myb-like domain profile. 530 594 IPR001005 -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 1 44 - -
Vvi2g0339 733 Pfam Myb/SANT-like DNA-binding domain 101 187 IPR044822 -
Vvi2g0339 733 Pfam Myb/SANT-like DNA-binding domain 536 623 IPR044822 -
Vvi2g0339 733 CDD GT1 101 166 - -
Vvi2g0339 733 CDD GT1 537 601 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 629 733 - -
Vvi2g0339 733 FunFam Trihelix transcription factor GT-2 103 164 - -
Vvi2g0339 733 SMART sant 534 596 IPR001005 -
Vvi2g0339 733 SMART sant 99 161 IPR001005 -
Vvi2g0339 733 Gene3D - 103 164 - -
Vvi2g0339 733 Gene3D - 538 599 - -
Vvi2g0339 733 MobiDBLite consensus disorder prediction 631 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0339 Vvi-Chr2 2747310 2750881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0339 95 627 Trihelix Transcription Factor Family AT1G76890 44.362 2.37e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi2g0339 Myb_DNA-bind_4 1.4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0339 - - vvi:100247896 702.59