Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0335 ATGGCTGGATTGAAGAGTTTCGACACATGGAGCCCTGTTATTGTAATGTTAGCTGTTGATTTTGCCTTCGCGGTTGTAAATATACTTCTCAAGGAAGTCCTCAATGCAGAAATGAACCATTTGGTCCTCATCACATACCGGCAATCAATTTCTACCATTTTCTTGGTCCCCATTGGATACTTTTGGGAAAGGAATAGCCGACCCAAGCTCACACTTCGGATCTTATGTTACCTCTTCTTCAGCGCTCTTGTCGGGGCATCACTGACACAATACTTCTTCCTTCTTGGGATTCAATACACATCTGCTACTTTCGCATGTGCTTTTATCAACATGGTCCCTGCAATCACATTTATAATGTCATTACCTTTTGGATTAGAGATTGTGAACATAAAAACCAACAGGGGGAGAGCAAAATTAATTGGAACCTTGGTATGTATCTGTGGAGCCATGATACTGACTCTTTACAAAGGAATGCCTTTAGTTAAATATTCGCGTCCAGAAGCTCCATCTCCAACCATGGATCAGGCTATCAGCTTGAGCTCGGGTAAGAAGACAGAGAGATGGACCGTTGGCTCAATAGCTTTGATGGGAGGCACCCTGTTGTGGTCTTCATGGTTTCTTATTCAGTCAAACATTGGCAAGCTATACCCATGTCAGTATTCGAGCACTGCCATCATGTCCTTCTTTGGTGCCATTCAATCAGCAGTCATTAGTTTGTCCATGGACAGAAACCTTTCCTTGTGGATTCTGAAAGGGAAAACAGAAATATTAACAGTTATTTATGCTGGAGTGGTAGGGTCTGGCTTATGCTATGTGGCAATGTCATGGTGTGTCAAGAAGAGGGGCCCTGTCTTCACTGCAGCATTCAGTCCCCTGGTTCAGATAATGGCAGTCATGTTTGATATCCCTATTCTGCATGAGCAACTCCATCTTGGAAGTGTGCTAGGATCGGCCACTGTAATTGCTGGATTATACATTCTTTTGTGGGGTAAGAAGAAGGATGCAGAGAATTCCTCAATGGAACTAGTCCAAGAAGCTGAAGAAGTTAAGGACCAAGAGGCACAGTTACAAGTAACCACAATCACGAGTGGTTCAAGGTGCCCCTGA 1107 0.4363 MAGLKSFDTWSPVIVMLAVDFAFAVVNILLKEVLNAEMNHLVLITYRQSISTIFLVPIGYFWERNSRPKLTLRILCYLFFSALVGASLTQYFFLLGIQYTSATFACAFINMVPAITFIMSLPFGLEIVNIKTNRGRAKLIGTLVCICGAMILTLYKGMPLVKYSRPEAPSPTMDQAISLSSGKKTERWTVGSIALMGGTLLWSSWFLIQSNIGKLYPCQYSSTAIMSFFGAIQSAVISLSMDRNLSLWILKGKTEILTVIYAGVVGSGLCYVAMSWCVKKRGPVFTAAFSPLVQIMAVMFDIPILHEQLHLGSVLGSATVIAGLYILLWGKKKDAENSSMELVQEAEEVKDQEAQLQVTTITSGSRCP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0335 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 333 - -
Vvi2g0335 368 Coils Coil 332 355 - -
Vvi2g0335 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 156 - -
Vvi2g0335 368 PANTHER WAT1-RELATED PROTEIN 12 340 IPR030184 GO:0016020|GO:0022857
Vvi2g0335 368 Pfam EamA-like transporter family 191 328 IPR000620 GO:0016020
Vvi2g0335 368 Pfam EamA-like transporter family 11 153 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0335 Vvi-Chr2 2716448 2718224 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0335 7 262 Nodulin-like Gene Family AT3G30340 48.837 5.28e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0335 - - vvi:100265040 726.472