Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0334 ATGCACAGGGGAGGAGGAGATGTGGGTATGGCAACGCGGGGCAGAAAGAAAACGTCGTCGAGGGGACACCATAGGTTTGTGGGAGTTAGGCAGAGGCCGTCAGGGAGATGGGTGGCGGAGATCAAGGACTCGTTGCAGAAGGTTAGGCTTTGGCTTGGAACGTTTGACACTGCGGAGGACGCGGCCCGCGCTTATGATCAAGCCGCTCGCTCTCTACGAGGTGCCAACGCCCGCACCAACTTTGAATTACCGCCCTCGTCTGATTCCAGCGACTGTGATGTCAACGGCAATTGTATGGCGGATGGGGTTGAGCCCTTCTCTTTTGACCAATTCTGTGCGACGCAAGTTGATGGACTGCTCGGCGCACTCAGGGCCAAGCTGCTTGACGGCAAGGGTTTGCAGGGGCACCCTGCCGCTGTTGTTGGCTCGCCCCACAACAGCATCGGCACACCCAAGAGAGAGGTATCTATGCCAGCAGGGATTGTGAATCCCATGCTGCTACAGGGTCCTAGTTATTCTCCCGCAAGTAAGGCTCCTGGGCTTCTCCTTGATCATCATGATAATGAGGTGGAATCAGGTCAGGCTGGGGTACAGTGGCAAAGCATTTACCAAATTGCATCGCCCCAATTGCCTTGGTCCTTACAGCCACAGATGAACCCTGTCCATGAGGGTGGCTTGTTTTGTACTACCACCACTGCCCCTGCTATTACAACTATATGGCCAACTTCAGCAACAACCGTAGCCACCAGTGATTTTCCATATTCGGAACAGGGCAGCCATGATGATTTGCCAAGTAATAAGAAGAGGAAAGTGGATGGATCAACCATGCCCTTGTTCCAAATCAATGGAGCAACTCAAGGAGTTTGGCCCTCTGAGCAGCAACTTCTGCACTGTGACAATGGCTCTTGGGACCCTCTCCTCTATGTATCATCTGTGCTAGGTTGA 945 0.5344 MHRGGGDVGMATRGRKKTSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDQAARSLRGANARTNFELPPSSDSSDCDVNGNCMADGVEPFSFDQFCATQVDGLLGALRAKLLDGKGLQGHPAAVVGSPHNSIGTPKREVSMPAGIVNPMLLQGPSYSPASKAPGLLLDHHDNEVESGQAGVQWQSIYQIASPQLPWSLQPQMNPVHEGGLFCTTTTAPAITTIWPTSATTVATSDFPYSEQGSHDDLPSNKKRKVDGSTMPLFQINGATQGVWPSEQQLLHCDNGSWDPLLYVSSVLG* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0334 314 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vvi2g0334 314 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vvi2g0334 314 FunFam ethylene-responsive transcription factor RAP2-11 24 83 - -
Vvi2g0334 314 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vvi2g0334 314 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vvi2g0334 314 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vvi2g0334 314 MobiDBLite consensus disorder prediction 1 28 - -
Vvi2g0334 314 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vvi2g0334 314 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vvi2g0334 314 SUPERFAMILY DNA-binding domain 26 82 IPR016177 GO:0003677
Vvi2g0334 314 MobiDBLite consensus disorder prediction 251 271 - -
Vvi2g0334 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0334 Vvi-Chr2 2711964 2712908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0334 13 81 AP2-EREBP Transcription Factor Family AT5G19790 67.143 7.33e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi2g0334 AP2 8.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0334 - - vvi:104881936 603.594