Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0324 ATGCTAAAAGCAGTATTAGACGCAGAAGAAGAATATCCTGTCCGAGTCTCACCTCCACAATTCTCGACACCTGCAAGATGTGAAAGTAGTTCCCATGACTGCAGGTGGCAACCCTATGCCAACGCAAAAGATTTTGAAGCTAATGCTGCTATGATCCTCATTATCCTCTTCTGCGCACTCATCTCTGCTCTTATTCTCAATGCTGTCATCCGCTGCTTCCTAAGTAGCCGCCGCTCATCTCGCCCGCCCCCCAGCCTTCCTGAGGTCCAACTGGACTCCAGCTCCATGGCAGCTGCAGACAAACAAGTGGCCCCTCCCACTCTGGTGTTTTCATCAGGGATGAAGCTGGCAGGAGCAGAGGCTGAGTGTGCTATTTGCTTGTCCGAGTTCGTGGAGGGAGAGGGAATCCGGGTGATGGGGCAGTGCAAGCATGGTTTCCACGTCCAGTGCATCCAAGAGTGGTTATCTTCCCACTCCTCATGTCCCACTTGCAGAGGTAGTTGTCTTCCCACTTCAGCCCATCTTCCAACCAAAGCCACCGGAAACGAACCCTTGGAAGTGTGA 564 0.5248 MLKAVLDAEEEYPVRVSPPQFSTPARCESSSHDCRWQPYANAKDFEANAAMILIILFCALISALILNAVIRCFLSSRRSSRPPPSLPEVQLDSSSMAAADKQVAPPTLVFSSGMKLAGAEAECAICLSEFVEGEGIRVMGQCKHGFHVQCIQEWLSSHSSCPTCRGSCLPTSAHLPTKATGNEPLEV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0324 187 CDD RING-H2_EL5-like 122 165 - -
Vvi2g0324 187 SMART FANCL_C_2 119 176 - -
Vvi2g0324 187 Pfam Ring finger domain 122 165 IPR001841 -
Vvi2g0324 187 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Vvi2g0324 187 SUPERFAMILY RING/U-box 122 171 - -
Vvi2g0324 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 170 IPR013083 -
Vvi2g0324 187 PANTHER RING-H2 FINGER PROTEIN ATL78 23 172 IPR044602 GO:0016567|GO:0016740
Vvi2g0324 187 SMART ring_2 123 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0324 Vvi-Chr2 2622891 2623454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0324 30 177 C3H Transcription Factor Family AT5G47610 50.658 1.13e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0324 K19040 - vvi:100242834 375.555