Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0322 ATGGATATCACCCTCACCACCATCCTTGTTTCCAATGGCGACTCCCGCATTCAGGTTGTTGTTTCTGATGGGGACCAACTCTCTCCCAAGAAACCTCACCTTTCTAGGACTCCCAGCTCTCACGATGAATGCAGAGTTTGTAATGCGGACATGGAAGAAGATTTGATAGAGCTTGGATGCCATTGTAGAGGTTGGCTTGCAAAAGCTCACCGAACATGTATAGATACTTGGTTCCGTACAAGAGGTTCAAACAAATGCGAGATATGCAAACAGGTAGCCGTAAATGTGCCACCTCCAGAGTCGCTGCCGAGTGGGGGTTTTAGACCAGTTTGCGTGGCTTTGACAATCCTCATTTTTGGTCTCCTGCTGGATGTGCTGGTATCAATTGTTTTTGGTGTGTCTTTACTGTGA 411 0.4696 MDITLTTILVSNGDSRIQVVVSDGDQLSPKKPHLSRTPSSHDECRVCNADMEEDLIELGCHCRGWLAKAHRTCIDTWFRTRGSNKCEICKQVAVNVPPPESLPSGGFRPVCVALTILIFGLLLDVLVSIVFGVSLL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0322 136 PANTHER ZINC FINGER, RING-CH-TYPE 20 101 - -
Vvi2g0322 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 93 IPR013083 -
Vvi2g0322 136 ProSiteProfiles Zinc finger RING-CH-type profile. 36 96 IPR011016 GO:0008270
Vvi2g0322 136 SMART ringv_2 43 90 IPR011016 GO:0008270
Vvi2g0322 136 Pfam RING-variant domain 44 89 IPR011016 GO:0008270
Vvi2g0322 136 SUPERFAMILY RING/U-box 40 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0322 Vvi-Chr2 2582738 2584091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0322 43 102 C3H Transcription Factor Family AT2G37950 44.444 8.50e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0322 - - vvi:100854506 282.722