Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0321 ATGAAGAAGAATGGTGTGGACCTGGAGGAAGAGGGTGATGCCGGAGGGTCATCGGTGGAGGTTGTTTCTGGGGATCACGTAACCCTCACCACCATCCTTGTTTCCAATGGCGACTCCCTCGTTCAGGTTGTTGTTTCTGATGGGGACCAACTCTCTCCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGTGCAAATTACTGGGTTTGGAGGGTTGACCCAAACTTTAGAGGGTCAAATATTGCGCAGGAACAAGCAAGGGGTTGTTTTAAACCACTTTGGGTGGCTTTGTCAATCCTCATTGGCGGTCTTCTGTTGGATGTGCTGATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGGTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAATTTTGCCATGAGTGGAGTTTAAGAAGAGTATCACAGAGAGTAGATACAAATGTGACTCTTGGTTACTATCCTACTTTGTAG 699 0.4664 MKKNGVDLEEEGDAGGSSVEVVSGDHVTLTTILVSNGDSLVQVVVSDGDQLSPKKPHLSRTPSSHDQCRVCQQEKEEDLIDLGCQCRGGLAKSHRTCIDTWFHTKGSNKCEICQQVASNVSPPESQPSANYWVWRVDPNFRGSNIAQEQARGCFKPLWVALSILIGGLLLDVLISIVLGVSALPVNIIIGVIVVLGLGTAIRLALEFCHEWSLRRVSQRVDTNVTLGYYPTL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0321 232 PANTHER ZINC FINGER, RING-CH-TYPE 45 188 - -
Vvi2g0321 232 SMART ringv_2 67 114 IPR011016 GO:0008270
Vvi2g0321 232 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Vvi2g0321 232 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g0321 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 117 IPR013083 -
Vvi2g0321 232 SUPERFAMILY RING/U-box 63 116 - -
Vvi2g0321 232 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0321 Vvi-Chr2 2577927 2579892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0321 68 120 C3H Transcription Factor Family AT2G37950 50.000 2.27e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0321 - - vvi:100266798 447.973