Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0318 ATGATTGGGACAAGCTCACATGAGCCCAATCAGATAATACGTGGGTCCCTACGGAGGCACCCACCCAGAGTCAGAAAAATCACGCATATACTGCTTAGCTCTATATCTCTGAAGATCCAGCTAAAATCAGAGATCATGGATTTGCTGCCAGATAGAGATGTAGTGTGTGAACAAGAGCAGGTCATTAGAGGTAAGCAGCTTCCTTTCTCATACTCATCCTCACCCTCCCCATCGTCGTCTTCTTCTCAGTACAGAAACCTTGTTCCCCTCCCCAACGGAGGCGACCGATGGGATGCCCAAATTCAACGGGGTTGGTTGGGTCACCAAGAAGACGGGATGAGATGTTTTGAGGGTGGAGCCGCCTCCAAACTTGAGCTCATGGACACATCGCCTACAAATGATGAGGATGATGTTGTTGATGATGATGTCAGGCGGAGAGATTCCCAAGCCCTAGAGAGAGAGCATATGTTTGATAAGGTCGTGACCCCCAGCGATGTCGGCAAGCTCAATCGCCTTGTTATTCCCAAGCAGCACGCTGAGAAGTATTTCCCGCTTGATTCCTCCGCAAACGAGAAGGGTCTTCTCCTGAATTTCGAGGACCGAAGTGGGAAGCCATGGCGATTCAGATATTCCTATTGGAATAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCCGCTTTGTTAAGGAGAAGAAGCTCGACGCCGGTGACATAGTGTCATTCCAGCGCGGCGTAGGAGAGTCCGGTAAGGATCGATTGTACATCGATTGGAGGCGCCGACCAGATGCGCCGGAGCCCTCATCTCTAGCGCACCACTTCTTCCACCGGTCAGTCCCATGGAGTCCCTTGTTCCTGCAGGCTCCGGTAGCGGGAGGGGCCGTGTCAATGGGGCGGCAGCAGGTGCAGCTGGCGCAGCCCAACTACATGAGTCATCTCGGTGGACGGAACCCCTACGGCAGTGGCGCATACAGTTACAACAATGCGGTAAACCCATGCTCGGGTTCAGTTTTTTACCTTAGACCCACTGCCCCACAACAGGTTGGAATGGTGCAAGTGCAACAAGGTGGGGTTGAGCCCATGGTATTCAACTCAGTGCCGGTGGTCCACGGGAAAGCTGCAGCCAAGCGGCTGAGGCTGTTTGGCGTAAACATGGAGTGCCCAATATCGGAGTCGGATGAATGTGACATATTGTCCTCCACCTCCATACCACATGCGGCAGTGGCATCTCAGCCTCCACACCTCTCTTCACCTTCTTCCCATCATCATCCTCTCCAATTAAGGCTCTATAATGGTACTCCACTGCCCACGCTGCCGACCAACTTGCTAAACAAAGGGAAGGAGTCAATGTCCTTTGATTTGGATATCTGA 1371 0.5259 MIGTSSHEPNQIIRGSLRRHPPRVRKITHILLSSISLKIQLKSEIMDLLPDRDVVCEQEQVIRGKQLPFSYSSSPSPSSSSSQYRNLVPLPNGGDRWDAQIQRGWLGHQEDGMRCFEGGAASKLELMDTSPTNDEDDVVDDDVRRRDSQALEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRSGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGESGKDRLYIDWRRRPDAPEPSSLAHHFFHRSVPWSPLFLQAPVAGGAVSMGRQQVQLAQPNYMSHLGGRNPYGSGAYSYNNAVNPCSGSVFYLRPTAPQQVGMVQVQQGGVEPMVFNSVPVVHGKAAAKRLRLFGVNMECPISESDECDILSSTSIPHAAVASQPPHLSSPSSHHHPLQLRLYNGTPLPTLPTNLLNKGKESMSFDLDI* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0318 456 MobiDBLite consensus disorder prediction 408 426 - -
Vvi2g0318 456 Pfam B3 DNA binding domain 157 261 IPR003340 GO:0003677
Vvi2g0318 456 FunFam B3 domain-containing protein 150 271 - -
Vvi2g0318 456 SUPERFAMILY DNA-binding pseudobarrel domain 154 262 IPR015300 -
Vvi2g0318 456 MobiDBLite consensus disorder prediction 408 430 - -
Vvi2g0318 456 Gene3D - 150 274 IPR015300 -
Vvi2g0318 456 CDD B3_DNA 155 251 IPR003340 GO:0003677
Vvi2g0318 456 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 143 402 IPR044800 GO:0003700
Vvi2g0318 456 ProSiteProfiles B3 DNA-binding domain profile. 157 262 IPR003340 GO:0003677
Vvi2g0318 456 SMART B3_2 157 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0318 Vvi-Chr2 2549060 2550882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0318 126 455 RAV Transcription Factor Family AT2G46870 46.667 8.34e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi2g0318 B3 2.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0318 - - vvi:100266710 769.229