Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0308 ATGGTCATGGTGGCACTTGCTTGTTTGGGTCTGTTGAGCCCACCAGAACAAGCTTATTCTGATGAATATACTTCCAGTTGTGTTCTTGTGATGGACGGGCAAACCCCAGCATTGATTCCAGTCTCAGTTGCAGTGGCATGGATCAAGAAGAGGGTTCCAGTGGTACAATATGGAAGTTTCCTTGAAAGACTTGGGATGCATGAGCATGGAGATGAGGATGCAGTGTGCCGTGTGTGCTTGGATTGCATCAAGGGAAGGCATGCGATCAGAGAGCTGTCCAACTGCTGTCATGTGTTCCATCAGGAATGCCTGGATGCTTGGGTAGATGAGGGTCAGGTCACTTGCCCTTTGTGTAGATCCATGCTACTTCCAGCTAAGAGTTGGGCGGCAGCAGCCACCTCCGTCAGGGTCACACAGCTGATGAACTCCTGGGGGTTCTCCAAATTGCATGTAGACATGAAAATATTTGTTTGGATTGCCCCAGGGTCATGTATGGTTCAAAAGGCTTCAGGCACTCCAGGCCCTATCCAGTTGATGACATTTGGCAGTGCCACACTGGGCACTGGGCAGCTTTTACCGCCCAAATCAAAATCACAGATGGTGTGTGACACAGTGACAGTATTCATGGCTGTGTTGGCACTGAATCATCTGGGTCTGTCCAGTCCATCAGTGGGTGATGTTTATGCAATAGTCCAGCCATCTCCTTCAACATGGATCAAGAAGAGGCTACCAGCAGTTGAATACAGTGATTTTCTACATAAAATCAGGAGGCAGGAAGATGAAGATACTGTCTGTGCCGTCTGCTTGAACGGGTTTGAGAGAAGGCATGAGATCAGAGAACTACCTAACTGTTGTCATGCGTTCCACAATCCACAGAGAGTCTGTGGATGA 891 0.486 MVMVALACLGLLSPPEQAYSDEYTSSCVLVMDGQTPALIPVSVAVAWIKKRVPVVQYGSFLERLGMHEHGDEDAVCRVCLDCIKGRHAIRELSNCCHVFHQECLDAWVDEGQVTCPLCRSMLLPAKSWAAAATSVRVTQLMNSWGFSKLHVDMKIFVWIAPGSCMVQKASGTPGPIQLMTFGSATLGTGQLLPPKSKSQMVCDTVTVFMAVLALNHLGLSSPSVGDVYAIVQPSPSTWIKKRLPAVEYSDFLHKIRRQEDEDTVCAVCLNGFERRHEIRELPNCCHAFHNPQRVCG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0308 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 134 IPR013083 -
Vvi2g0308 296 SMART ring_2 76 118 IPR001841 -
Vvi2g0308 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 293 IPR013083 -
Vvi2g0308 296 SMART ringv_2 75 119 IPR011016 GO:0008270
Vvi2g0308 296 ProSiteProfiles Zinc finger RING-type profile. 76 119 IPR001841 -
Vvi2g0308 296 PANTHER RING ZINC FINGER PROTEIN-RELATED 41 131 - -
Vvi2g0308 296 Pfam Ring finger domain 76 119 IPR001841 -
Vvi2g0308 296 SUPERFAMILY RING/U-box 255 290 - -
Vvi2g0308 296 SUPERFAMILY RING/U-box 60 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0308 Vvi-Chr2 2474813 2477481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0308 76 124 C3H Transcription Factor Family AT4G00305 44.898 4.91e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0308 - - vvi:104881535 267.7