LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0307	ATGAATTCAAACTGGGCAGGAGTCTGGCCAGAGTCTGAAAGCTTCAAGGATGAAGGCATGGGTCCAATTCCATCGCGTTGGAAAGGTATCTGCCAACACGGGGAGCGCTTCAATTCCACCAATTGCAACAGGAAACTTATTGGGGCTCGCTGGTTTTTTAAAGGGATCCACCAGGAAATAGGAAAATTCATGAATATAACTGACAACCTAGAATTTCTGTCACCAAGGGATGGAATTGGCCATGGCACTCATACAGCTTCAACAGCAGCAGGCTATTTTGTAGAGAAAGCAAACTACAGAGGACTAGCTACAGGCCTAGCCAGAGGAGGTGCACCTCTTGCTCGGTTAGCAATTTACAAGGCTTGCTGGGCCATTATCAGTGGAGCATGCAGTGATGCCGATATTCTGAAAGCATTTGACAAAGCCATACATGATGGGGTGGATATCCTATCTCTGTCTGTTGGCAATGATATTCCTCTATTCTCCTATGTTGATCAACGTGATTCAATTGCAATCGCTTCCTTCCATGCAATTGCAAAGGGGATAACGGTAGTTTGTTCAGCAGGAAATGATGGACCTTTCTCACAGACAATAGCAAACACTGCACCCTGGCTCATTACTGTGGCAGCCACCACCATTGACAGGGCCTTCCCAACAGCCATCATACTTGGGAACAACCAAACTTTCTTGGGTCAATCTATTGATACAGGAAAGCATAAACTTGGATTCACTGGTCTCACTTATTCAGAACGCGTAGCTTTAGACCCAAAGGACGATTCAGCAAAGGACTGTCAGCCTGGAAGCCTCAATGCAACATTAGCAGCAGGAAAAATTATCCTCTGTTTCTCAAAATCGGACAAACAGGATATAATTTCTGCATCAGGTGCAGTGCTGGAAGCAGGAGGCATTGGACTTATTTTTGCACAGTTCCCCACCAGTCAGCTTGAGTCATGTGATTTAATTCCTTGTATCAAAGTAAATTATGAAGTCGGGACACAGATACTTACTTACATCAGAAAAGCAAGGTCTCCTACTGCAAAGCTGAAATTTCCAAAGACTGTTACAGGGAAATGGGCATCTCCACATGTTGCATATTTCTCGTCCAGAGGACCCAGTTCCATGTCTCCTGCTGTGCTAAAGCCCGATGTTGCTGCCCCAGGAGTGAACATCTTAGCAGCTTATTCACCAGTTGATGCTGGAACTAGCAATGGGTTTGCCTTCTTATCAGGAACTTCAATGGCTTGTCCTCATGTGAGTGGATTAGCAGCACTCATTAAATCCGCCCATCCAACTTGGTCTCCTGCAGCCATAAGATCAGCTCTTGTCACTTCAGCTTCCCAAACTGGAACAGATGGCATGGATATAATTGAGGAGGGGCCGACTCGCAAGGCAGCAGACCCATTTGACATTGGTGGTGGCCATGTCAATCCCAACAAGGCACTAAAGCCAGGGCTCATTTACAATATCAGTATGGAGGACTACATCCAGTTCCTCTGCTCCATGGGTTACAGCAATCCATCCATTGGCAGGTTAACCAAGACCACGACAAATTGCACGAGAGGCAGCCATTTTCAATTAAACCTCAACCTCCCTTCCATCACCATTCCAAACCTCAAAAAGAAAGTAACAGTCATGAGAACTGTGACAAACGTGGGACACATTAATTCAGTGTATAAAGCTGAGGTGCAGGCTCCTTATGGCATTAAAATGGCAGTTGAACCTCATATACTGAGCTTCAACTTAACCACCCAATTTCTTCATTTCAAAGTTACCTTTTTCTCAACTCAGACGGTCCATGGAGACTACAAATTCGGAAGCCTAACATGGACAGATGGTGAGCATTTTGTCAGGAGTCCTATAGCCATACGTGCAATCAAATTTGACATGTATGCAGATGTATAA	1902	0.4501	MNSNWAGVWPESESFKDEGMGPIPSRWKGICQHGERFNSTNCNRKLIGARWFFKGIHQEIGKFMNITDNLEFLSPRDGIGHGTHTASTAAGYFVEKANYRGLATGLARGGAPLARLAIYKACWAIISGACSDADILKAFDKAIHDGVDILSLSVGNDIPLFSYVDQRDSIAIASFHAIAKGITVVCSAGNDGPFSQTIANTAPWLITVAATTIDRAFPTAIILGNNQTFLGQSIDTGKHKLGFTGLTYSERVALDPKDDSAKDCQPGSLNATLAAGKIILCFSKSDKQDIISASGAVLEAGGIGLIFAQFPTSQLESCDLIPCIKVNYEVGTQILTYIRKARSPTAKLKFPKTVTGKWASPHVAYFSSRGPSSMSPAVLKPDVAAPGVNILAAYSPVDAGTSNGFAFLSGTSMACPHVSGLAALIKSAHPTWSPAAIRSALVTSASQTGTDGMDIIEEGPTRKAADPFDIGGGHVNPNKALKPGLIYNISMEDYIQFLCSMGYSNPSIGRLTKTTTNCTRGSHFQLNLNLPSITIPNLKKKVTVMRTVTNVGHINSVYKAEVQAPYGIKMAVEPHILSFNLTTQFLHFKVTFFSTQTVHGDYKFGSLTWTDGEHFVRSPIAIRAIKFDMYADV*	634

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0307	633	Gene3D	-	214	355	-	-
	Vvi2g0307	633	FunFam	subtilisin-like protease SBT1.5	214	355	-	-
	Vvi2g0307	633	Pfam	Subtilase family	76	449	IPR000209	GO:0006508\|GO:0008236
	Vvi2g0307	633	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	481	-	-
	Vvi2g0307	633	FunFam	Subtilisin-like protease SBT1.5	5	223	-	-
	Vvi2g0307	633	CDD	Peptidases_S8_3	7	446	IPR034197	-
	Vvi2g0307	633	ProSitePatterns	Serine proteases, subtilase family, serine active site.	410	420	IPR023828	-
	Vvi2g0307	633	CDD	PA_subtilisin_like	221	348	-	-
	Vvi2g0307	633	Pfam	Fibronectin type-III domain	527	622	IPR041469	-
	Vvi2g0307	633	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	7	621	IPR045051	-
	Vvi2g0307	633	FunFam	Subtilisin-like protease SBT1.5	498	625	-	-
	Vvi2g0307	633	SUPERFAMILY	Subtilisin-like	38	485	IPR036852	GO:0004252\|GO:0006508
	Vvi2g0307	633	Gene3D	Peptidase S8/S53 domain	7	494	IPR036852	GO:0004252\|GO:0006508
	Vvi2g0307	633	PRINTS	Subtilisin serine protease family (S8) signature	77	90	IPR015500	-
	Vvi2g0307	633	PRINTS	Subtilisin serine protease family (S8) signature	409	425	IPR015500	-
	Vvi2g0307	633	Gene3D	-	498	625	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0307	Vvi-Chr2	2471099	2473463	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0307	7	632	Subtilisin-like Serine Gene Family	AT1G32960	52.532	0.0	642

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0307	-		-	vvi:100263381	1255.35