Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0293 ATGAAGGGAAGGTCGCACCGCCTTCCTAGCTCAGATCCTCCCGAGGACTGGGTGGATGGTTCTTGGACGGTGGATTGCGTCTGTGGTGTGAATTTTGATGATGGGGAAGAGATGGTGAACTGCGATGAATGTGGCGTGTGGGTGCATACGCGGTGCTCGCGCTATGTGAAGGGGGAGAAGTTGTTTGCTTGCGATAAATGCAAGAGCAAGAATAATAGGAATGATAGCGAGGAGACGGAGGTTGCTCAATTGCTGGTTGAGCTGCCCACTAAGACAATGAGGATGGAGAGTTCGTATGGATCGAATATTCCTGCTAGACGGCCTTTTAGGCTGTGGACGGATATACCAATTGAGGAGAGGGTACATGTTCAGGGCATTCCGGGAGGCGAACCTGGCCTGTTTGAAGGTCTGTCCTCCGTTTTCACGCCGGAGTTGTGGAAGTGCACTGGTTACGTGCCCAAGAAGTTCAATTTCCAGTATAGAGAGTTCCCCTGTTGGGATGAGAAGGAAGAGGCTGATTCTAAAATTGAGGAAGAAAATGAAAATCCTGTGGACAAAGGAGCCGGGGTTCTGTTTTCACTGTCAAAGGAGGCTGTTTTGGCTGCTCCAGCAGCTTTGGTTAATATGAGAGGCCAAACTGAGGAAGGTGGGTTTGACAGAAAACCAGCCACAAAAGAGCTGAAGACGTGGGAGGCTGGGGATTCTGATGTTAGGCCTGCTCAGAATGGCGTGAAGAAGGAGAGAAGCTTACTCCGTCCATTTGTGGTTCATCCGAGTAAGAGGAAGAAAGAAGATTTCGGCCCATCAAAGGATCGCAGTGGAAAGAAGAGGATTAGGACTGCTGAAAAAGAGGATACTAAAAGAAGAGGTTCACATTCTTCCAAAACAGGGTTTACATCCTCTAGTGATGCAAAACAGTTGGAATATCACGAAGACAGAAGTTCCAAGCTTCCCAAGACTAATAATCAGAGTAACAATAAAGGGAATTTGAGGGGCACTCTGCCCACAGAGCCTGCATCTGATGTTTTTCATGTAGTGGACAGTAATGTTGACAAGTCGAATGACAGCTTAGTGGCTGCTGAGCACCATTCGGAATCTTTTCCTGCTGATGCATCTAGACACGATTTTCCCATTGGAGCTGGTCTAGATGAAGATAAGACCGAGCATCAAGTTCCTGCAAGATCTGAAAGTTCTCCTAAAACTGACATCGTATCATCAACATTAGAAAACAACACAGTTGAGAGTGTTCCTATGAAGGAAGAGGTGGTTAACATGGCTGCTGCTAATTTAGATGATAATGGAGGTTCCTATAAAAATATGGAAATCGATGTACAGAAATCAAACCCTCCTTTCGAAGAGGTGCCTAGTGTAGCATCAAATTTGAAAGAAAGTCAAGTTCTTCTGGATTCAAATGGTGACATGTTGCTAAATTCTGTAAAGCCTGATTTAAAAGTGAAAGCAGATGTGGATGATGATAATTCTGGAAGGATCTTGGATTCTCAGTCTTCTGCACTTGTTGATGTAAAGCCCATTGGCACTGAGCACCTATCTCAAATTCCAGGGATATCTGCAGATCAGATGTCCGAAAATTCTAAATTGAATGATTTAGTGGCTCTAAGCTTTTCGCAATGCAGTGACCATAAGGCACAAGATGTTGACAAAAGTGCAGAAGTAGCCAGTGACCCTCATGCAGATAAAGCTGATCAATTATCTGGTGGCACTCGTCTGCATAAGCAGGAATTAGATGTCTCAGATGGTTCCATGATAGTGCAGAAAAGTACTTCAGAACCCAAACATGGTTCAAAACTAGCTGAAGAGCCACCAAAATTAGATGGAACTGTATTTAGCTCTCAAGCACTATCTAGTCAGCGTAAAATGGTAGTATGTGTAGGAAAATCTTCTCCGAGTTCATCTACTGTTGTGATCTCCAAGTCATCTGTTTCTGATAACTGTAAACCCATGAATACTCAGAACTCTAATCCTATTGCTAAAGAACGAATAGTTTCTAACTGCAATACTAACAGTAAGAAAGATCATGCTGCAAGTGATGTGGTCAGGGATGAAGACAGGCATGAAATGCCAAGGAAAACAGTTAAAGAGCGTCCAAAATCATCCATCAATCCTGCTTTGAAAGCATCACACTCAAACAGGATTTCCCATTCTTCTGTTTCCAAGAGACCCCTGTCAGATTCAAAAGATTCAAAAGATCCTGTGTTGCACTCGTCCTCTAAGGCATCTTCAGCCCAGAATACTGCTGTTCCTTCAGGTTCTGGTGACTCTGCTGGTTCACTGCAAACTCAGAGTGCTGTGCTTGTACAAAATAAAGTACCAGCCCCAAGTTTGTCACAAAGAGGTGAAAAGTTTAGCACTTCAAATTCCCAGTCATCATCTAAGGTGAATAATATGTCATCTATGCATCCTACTGCACCTTCAAATTCTCCTGCAACACTAAGCGATGAAGAGCTTGCTTTACTTTTGCATCAAGAACTTAATAGTTCTCCTAGAGTGCCTCGGGTACCACGTGTGCGCCATGCGGGTAGCTTACCTCAGTTGACTTCTCCAACTCCTACAAGCATGCTGATAAAGCGAACATCATCTTCTGGAGGAAAGGATCATGGTTTGATTCCTAGAAGAAAAAGCAAGGATATTTCCAAAGATGGGTCTCGAGGTTTTCGGGAGCGTGATGATGAAGCCAAGAAAATGGACAGAGTGCCTTCACCTGATCAGAGGAGACATGATCCAGTGCATGCAGCAGATGCTTCTACGAAGAGGGAAGCAGACGATGGGTTTCCGAAAGCAGAACATTCTGTCAAGAAGAATATTCCCCTTGCCTCCAACACAACTGCAAATAGTGGTCCATCCTCCTCAAATGAGGTTAATGATCAAAATTTAGCATCTGTACGTAATTCACCAAGGAATATGTCTGATGATGATGCGGGCACTGTACGGGTTCCTGCACATCGCACTTTACCAGGTTTGATCAATGATATTATGAGCAAAGGCAGGCGCATGACATATGAAGAACTCTGTAATGCAGTCTTGCCGCACTGGCATAACTTGAGGAAGCATAATGGAGAGCGTTATGCATATTCAAGTCATTCGCAGGCTGTTCTTGATTGCCTGAGGAACCGGAATGAATGGGCACGGTTGATTGATCGTGGTCCCAAGACCAATGCGAGCAGGAAGAGACGCAAGCTTGATGCTGAACCATCAAGCTTTGAATTGGATGATAATGAATATGGCAAGGGCAAAATGGCAAAGGAGGTAGAAAGCAAGAGTCTTGAATCACACAGAGAAGAGTTTCCAAAGGGCAAGCGGAAAGCACGACGCAGACGACTGGCTCTGCAAGGCCGAGGAATAAAAGATGTCAGGAAAAGACGAAAGGCAGCTATCATCAGTGATGATGACATTGAACCATTTTCTAATTCTAGCGATGAGAGCATATTCAGTGAGGATGAGATTCAGGGAGGTGGAACATGTCCTGTTGGAAGTGAGGCTTCAGCTAGCTCAGATGAGGTGGGAACCAGGCTATAG 3534 0.4457 MKGRSHRLPSSDPPEDWVDGSWTVDCVCGVNFDDGEEMVNCDECGVWVHTRCSRYVKGEKLFACDKCKSKNNRNDSEETEVAQLLVELPTKTMRMESSYGSNIPARRPFRLWTDIPIEERVHVQGIPGGEPGLFEGLSSVFTPELWKCTGYVPKKFNFQYREFPCWDEKEEADSKIEEENENPVDKGAGVLFSLSKEAVLAAPAALVNMRGQTEEGGFDRKPATKELKTWEAGDSDVRPAQNGVKKERSLLRPFVVHPSKRKKEDFGPSKDRSGKKRIRTAEKEDTKRRGSHSSKTGFTSSSDAKQLEYHEDRSSKLPKTNNQSNNKGNLRGTLPTEPASDVFHVVDSNVDKSNDSLVAAEHHSESFPADASRHDFPIGAGLDEDKTEHQVPARSESSPKTDIVSSTLENNTVESVPMKEEVVNMAAANLDDNGGSYKNMEIDVQKSNPPFEEVPSVASNLKESQVLLDSNGDMLLNSVKPDLKVKADVDDDNSGRILDSQSSALVDVKPIGTEHLSQIPGISADQMSENSKLNDLVALSFSQCSDHKAQDVDKSAEVASDPHADKADQLSGGTRLHKQELDVSDGSMIVQKSTSEPKHGSKLAEEPPKLDGTVFSSQALSSQRKMVVCVGKSSPSSSTVVISKSSVSDNCKPMNTQNSNPIAKERIVSNCNTNSKKDHAASDVVRDEDRHEMPRKTVKERPKSSINPALKASHSNRISHSSVSKRPLSDSKDSKDPVLHSSSKASSAQNTAVPSGSGDSAGSLQTQSAVLVQNKVPAPSLSQRGEKFSTSNSQSSSKVNNMSSMHPTAPSNSPATLSDEELALLLHQELNSSPRVPRVPRVRHAGSLPQLTSPTPTSMLIKRTSSSGGKDHGLIPRRKSKDISKDGSRGFRERDDEAKKMDRVPSPDQRRHDPVHAADASTKREADDGFPKAEHSVKKNIPLASNTTANSGPSSSNEVNDQNLASVRNSPRNMSDDDAGTVRVPAHRTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRNEWARLIDRGPKTNASRKRRKLDAEPSSFELDDNEYGKGKMAKEVESKSLESHREEFPKGKRKARRRRLALQGRGIKDVRKRRKAAIISDDDIEPFSNSSDESIFSEDEIQGGGTCPVGSEASASSDEVGTRL* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 1057 1119 - -
Vvi2g0293 1177 PANTHER UNCHARACTERIZED 1 1167 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 550 582 - -
Vvi2g0293 1177 SUPERFAMILY FYVE/PHD zinc finger 14 71 IPR011011 -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 229 417 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 240 292 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 1162 1177 - -
Vvi2g0293 1177 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 318 333 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 630 961 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 1133 1177 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 630 678 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 396 414 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 940 961 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 708 725 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 872 935 - -
Vvi2g0293 1177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 76 IPR013083 -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 740 818 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 848 865 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 679 702 - -
Vvi2g0293 1177 SMART PHD_3 25 68 IPR001965 -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 550 611 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 377 395 - -
Vvi2g0293 1177 MobiDBLite consensus disorder prediction 1057 1102 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0293 24 67 PHD Transcription Factor Family AT5G22260 44.681 2.12e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0293 - - vvi:100244469 2273.82