Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0292 ATGGCCGTTGTTGAGAATGGTGGAGTGGATTTGGGGATCAGCGTTGGCTCGTCGAATAGGAACTTCGACGCGGCGGCACCGGAGCAGAATGTAAGCGGCGATCAAGAGCATCTGGTGAGGGCTCGGATGGTTGATCCGAGTTTACATCAGAACAACAACGGTAACGGTCCGATCCTGAGGCCGCACGATCAGGGCCTATACATGAAGGTACAACAGTTTCAGGAGAGGGGGGCTGCGCCCCCTGCCCACGTTAGCAGTCACAAGGCTCAGGTGGCGTCGGTTCAGCACAACCTTGACCGCTCGCAGAAGATCGGCGTTCAGAATATGCAGGTGGGGCCGGTAGCTGCGCAGCATCGCTCCAATGGTGGTCATTTGCAGAGGAATGGGGACTCTGGTGTGGATATGAGAGAGTTGCAGGAGCTATTCTCTAAGCTGAACCCCATGGCTGAAGAGTTTGTTCCTCCATCGCTTGCTAACAATGGATTGAACGGTGGTTTTTACTCTAACGGCTCTGAGACGCATAACAATACAAGAAATGGACAAGTTAATGGTCGACGGAAGAAAAATAATTTCGGACAAGGCAAACGGAGGATGAATAGTCGAACAAGTATGGCACAACGGGAAGAAATCATCCGGAGGACTGTGTATGTGTCCGATATTGATCAGCAGGTTACTGAAGAGAAGCTTGCAGCTCTATTTATAACTTGTGGGCAGGTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAGAAGGTGCACGGGCTGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGAATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGGTCTCTCAAGCTGATGTTAAACTCTTTTTTGAATCGGTCTGTGGAGAGGTTTATCGTTTGAGGCTTCTTGGAGACTATCATCATTCTACTCGCATCGCATTTGTTGAGTTTATAATGGCTGAAAGTGCAATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAGGGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTATACATTAA 1197 0.4912 MAVVENGGVDLGISVGSSNRNFDAAAPEQNVSGDQEHLVRARMVDPSLHQNNNGNGPILRPHDQGLYMKVQQFQERGAAPPAHVSSHKAQVASVQHNLDRSQKIGVQNMQVGPVAAQHRSNGGHLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLANNGLNGGFYSNGSETHNNTRNGQVNGRRKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFITCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRAPRLPIH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0292 398 Pfam Ataxin-2 C-terminal region 141 156 IPR009818 -
Vvi2g0292 398 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 140 391 - -
Vvi2g0292 398 SUPERFAMILY RNA-binding domain, RBD 164 286 IPR035979 GO:0003676
Vvi2g0292 398 MobiDBLite consensus disorder prediction 163 188 - -
Vvi2g0292 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 386 IPR000504 GO:0003723
Vvi2g0292 398 Gene3D - 297 392 IPR012677 -
Vvi2g0292 398 Gene3D - 168 290 IPR012677 -
Vvi2g0292 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 288 IPR000504 GO:0003723
Vvi2g0292 398 CDD RRM1_CID8_like 211 290 IPR034823 -
Vvi2g0292 398 SMART rrm1_1 214 284 IPR000504 GO:0003723
Vvi2g0292 398 SMART rrm1_1 311 382 IPR000504 GO:0003723
Vvi2g0292 398 FunFam Polyadenylate-binding protein-interacting protein 11 178 290 - -
Vvi2g0292 398 SUPERFAMILY RNA-binding domain, RBD 300 392 IPR035979 GO:0003676
Vvi2g0292 398 MobiDBLite consensus disorder prediction 163 204 - -
Vvi2g0292 398 CDD RRM2_CID8_like 306 387 IPR034825 -
Vvi2g0292 398 FunFam Polyadenylate-binding protein-interacting protein 10 304 382 - -
Vvi2g0292 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Vvi2g0292 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 379 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0292 Vvi-Chr2 2372416 2384890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0292 212 381 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 1.82e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0292 - - vvi:100261591 800.431