Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0288 ATGTCAGAGGATATGAATCTATCAGTGAATGGTCAGTCTCAGGTCCCTCCAGGGTTCCGATTCCATCCTACAGAAGAGGAGCTTCTGCACTACTATTTGAGGAAGAAGGTGGCCTATGAGAAGATAGACCTGGATGTGATTCGTGATGTTGATCTTAATAAGCTTGAGCCCTGGGATATTCAAGAGAAATGCAAAATAGGATCCACTCCACAGAATGATTGGTACTTCTTCAGTCACAAAGATAAGAAGTACCCCACAGGGACAAGAACAAATCGCGCCACCGCAGCAGGGTTCTGGAAAGCCACTGGGCGCGATAAGGTTATCTACAGTAGCTTTAGAAGAATTGGAATGAGGAAGACACTGGTTTTCTACAAGGGTCGAGCCCCACACGGACAAAAGTCCGATTGGATCATGCATGAGTACAGGCTTGAGGAGAACACCCCAGTTCATGACACCATGGCATCCAATTCACTGGGAGAGTCCATGCCAGAAGATGGTTGGGTGGTCTGCCGCGTTTTCAGAAAGAAAAACTACCAGAAGACCTTGGAGAGCCCTAAAAGCACATCAAACTCTATGGATTCAAGGACCCAGATGCTCAATTCAAGCAACGATGGGGTTCTAGATCAGATACTTTCCTACATGGGAAGGACTTGCAAGCAGGAAAATGAAGCAATCAGCAACGTGAACTTCTCTGACAGCAACAACACCATGAGGTTTCTCAACCAAAACAACACAGGCATCAGCGAGGGTCTCCAAGAAAGGTTTATGCATCTTCCAAGGCTGGAGAGCCCAACTCTTCCTTCTCTGCCCAACAACAGCTCACACTTTGATCAGGAACGGTGTTTTAATATTGCTTGCTTGCAATCAATTGATGAGATGCTCAGAGGAAGTGAGCCTTCCTCTGAGAACCAAGGCAGTGGGTGTAACACCACCCCAGTTCATGACCCCAAAGCTGGGCTCAATGACTGGGTTGCCTTTGACAGGCTGGTGGCTTCTCAGCTCAATGGTCAAGTGGACACCAAGCAACTCTCCTGTTTCAGTACAGACCCCAACATGGGTTTCTGCCTTTCTCCTGACCATGATGTAGAATTATCACACCTACGTTCGAGTAGACCGAATCCAAACCCCCAGAACTATAACAGCGAGATGGATCTGTGGAACTTCACTCGATCATCCTCCTCCTCCTCATCAGACCCATTAGGCCATTTGTCGGTATAA 1218 0.4745 MSEDMNLSVNGQSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSSFRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEENTPVHDTMASNSLGESMPEDGWVVCRVFRKKNYQKTLESPKSTSNSMDSRTQMLNSSNDGVLDQILSYMGRTCKQENEAISNVNFSDSNNTMRFLNQNNTGISEGLQERFMHLPRLESPTLPSLPNNSSHFDQERCFNIACLQSIDEMLRGSEPSSENQGSGCNTTPVHDPKAGLNDWVAFDRLVASQLNGQVDTKQLSCFSTDPNMGFCLSPDHDVELSHLRSSRPNPNPQNYNSEMDLWNFTRSSSSSSSDPLGHLSV* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0288 405 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Vvi2g0288 405 FunFam NAC domain-containing protein 24 179 - -
Vvi2g0288 405 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Vvi2g0288 405 SUPERFAMILY NAC domain 11 175 IPR036093 GO:0003677|GO:0006355
Vvi2g0288 405 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Vvi2g0288 405 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0288 Vvi-Chr2 2347356 2348758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0288 1 404 NAC Transcription Factor Family AT2G46770 50.827 6.91e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi2g0288 NAM 1.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0288 - - vvi:100244394 815.453