Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0286 ATGGGAAAGAAGGGAGGGTCCTCCTGGTTGACAGTGGTGAAAAGGGCCTTCAGGTCTCCAATCAAGGACAATGAGAAAAAGAGTAGCAGAAGGAGAGAAGAGCATGAGCTAGAAGAAGAAGAAGAGGAAAAGAAGAGAGAGAAGCGAAGATGGATCTTCCGGAAACCTACTACTACTACCACTACTACTAATCATGTTCAAGTTCAAGAATGTGAAACAAAGATGATATCAAGTGTACCCACAAATCCCATTTTGGTTGCTGAGCAGAGGCATGCAATTGCAGTGGCAGCAGCCACAGCAGCGGCAGCTGAAGCTGCTGTGGCAACAGCCCAAGCAGCTGTGGAGATTGTCCGTCTCACTAGGCCATCCAGCTTCTTCAGAGAACACTACGCTGCTGTAGTCATTCAGACAGCTTTCAGAGGCTACTTGGCAAGGACAGCGCTTCGTGCACTTAAGGGTCTTGTAAAACTTCAAGCTTTGGTAAGAGGACACAATGTTCGAAAGCAGGCGAAGATGACACTGAAATGTATGCAAGCTCTGGTCCGAGTGCAGTCTCGGGTGCGTGATCAGCGTGCGAGGCTTTCGCATGAAGGGAGCAGGAGGTCAATGTTTGCTGAAACCAACAGCCTATGGGAGTCTCGATATCTTCAGGAAATTAGACACAGAAAGTCCATGTCGAGGGATAGAAGCAGCATAGCAGATGAGTGTTGCGGCCGCCCCCATGAGATTGAGGAGATTGAAGCCATGTTCAGAAGTAGGAAGGAAGGTGCATTAAAACGTGAAAAAGCCCTGGCTTACGCTTTCTCTCATCAGGTATGGAGATCAGGAAGGAACCCATTTGCAGGAGATGAAGAAGATCTAGAGGAAAGAACAAAATGGCTTCAAAGGTGGATGGCAACAAAGCGATGGGAAAGCAGCAGCAGAGCTTCTACTGATAAAAGAGATGCTATAAAGACGGTTGAAATTGACACTTCTAGGCCTTATTCTTACTCTGCTAGTAATGTTCGAAGGTCCTCAGTTTATCAAAATCAACACCTCAGACCACCCACCCCACATTCCACTGCCTCTCCCTTCCACAAAGCGCACCACAACCTCTCTCTCCACCTCTCACCTGTCACTCCCTCTCCTTCCAAAACAAGACCCCTGCAAGTCCGTTCAGCAAGCCCTAGATGCCTAAAAGAAGAAGAAAGCCATTCCACAGCCCACACCCCGAACCTAGCCTCCATTCATTGTTTCAATGGCAGTATGTGCCGCCAAGGAGCAAGCACAAATGGGGATGTTGCTAGTGCTGTATTGCCCAACTACATGGCTGCCACTGAGTCTGCCAAGGCTCGGGTTCGTTCAGAAAGTGCACCAAGACAGAAGCCCTCAACGCCAGAGAGAGAGCGAGGAGGTGGGTCGGCAAGGAAGCGGCTCTCTTACCCAGTCCCTGAGGCGCCATTGAGTAGCACCAGCACTACTTGTAGTAGTATGCTCAGCAAGAGCCTGAGAAGCCCCAGCTTCAAAAGTGTTCATGCCAACCTCTCTTCCTGCTACACTGACAGCCTTGGTGGAGAGATTTCTCCAACTACAACCAGTACCGAGCAAAGAGGGTGGCTAAGATGA 1605 0.4941 MGKKGGSSWLTVVKRAFRSPIKDNEKKSSRRREEHELEEEEEEKKREKRRWIFRKPTTTTTTTNHVQVQECETKMISSVPTNPILVAEQRHAIAVAAATAAAAEAAVATAQAAVEIVRLTRPSSFFREHYAAVVIQTAFRGYLARTALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQSRVRDQRARLSHEGSRRSMFAETNSLWESRYLQEIRHRKSMSRDRSSIADECCGRPHEIEEIEAMFRSRKEGALKREKALAYAFSHQVWRSGRNPFAGDEEDLEERTKWLQRWMATKRWESSSRASTDKRDAIKTVEIDTSRPYSYSASNVRRSSVYQNQHLRPPTPHSTASPFHKAHHNLSLHLSPVTPSPSKTRPLQVRSASPRCLKEEESHSTAHTPNLASIHCFNGSMCRQGASTNGDVASAVLPNYMAATESAKARVRSESAPRQKPSTPERERGGGSARKRLSYPVPEAPLSSTSTTCSSMLSKSLRSPSFKSVHANLSSCYTDSLGGEISPTTTSTEQRGWLR* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0286 534 SMART iq_5 127 149 IPR000048 GO:0005515
Vvi2g0286 534 SMART iq_5 150 171 IPR000048 GO:0005515
Vvi2g0286 534 MobiDBLite consensus disorder prediction 20 48 - -
Vvi2g0286 534 Pfam Protein of unknown function (DUF4005) 388 489 IPR025064 -
Vvi2g0286 534 MobiDBLite consensus disorder prediction 514 534 - -
Vvi2g0286 534 Gene3D - 127 177 - -
Vvi2g0286 534 Pfam IQ calmodulin-binding motif 131 149 IPR000048 GO:0005515
Vvi2g0286 534 Pfam IQ calmodulin-binding motif 155 171 IPR000048 GO:0005515
Vvi2g0286 534 MobiDBLite consensus disorder prediction 367 400 - -
Vvi2g0286 534 Coils Coil 23 50 - -
Vvi2g0286 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 193 IPR027417 -
Vvi2g0286 534 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Vvi2g0286 534 MobiDBLite consensus disorder prediction 368 384 - -
Vvi2g0286 534 MobiDBLite consensus disorder prediction 441 489 - -
Vvi2g0286 534 PANTHER IQ-DOMAIN 5-RELATED 1 482 - -
Vvi2g0286 534 MobiDBLite consensus disorder prediction 446 468 - -
Vvi2g0286 534 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Vvi2g0286 534 FunFam IQ-domain 11 127 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0286 Vvi-Chr2 2335462 2337426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0286 9 534 IQD Protein Family AT4G00820 50.998 1.90e-144 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0286 - - vvi:100263362 974.926