Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0285 ATGGCGGCTTCTCTGAGAGTTCCTTTTACAGCAGCTCAGTGGCAAGAGCTTGAGCGGCAGACTATAATCTACAAGTACATGATGGCTTCTGTCCCTATTCCACCTGAACTCCTCATACCCATTAGCAGAAGCCTCTCAGATGTGACTGCTTCCCACTCTAATCGTTCTCTGGATTTGCGGTTCCCGAACAGCTCGGATCCTGAGCCGTGGAGGTGCCGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGTGGCACCTGACCAGAAGTACTGCGAGCGACACACTCATAAAGGCCGACCCCGTTCAAGAAAGCCTGTGGAATTGCATTCCGAGTTAATCAACAACTCCGCCACCACCACCGCCACCACCACCAGTAGCAACAACAAGCAGCCACTTAACCTTCCAGCTGACACCACCAAATCCTTTCAAGACAGGTCTCATCTTCTGAACCAAACGGAGGGCCACCACACATCTGCCTTCACAACCTTGGCGTCTGCTCCACCATACGGCCAAGTCAGGTGGGTTAGAGTTTAG 540 0.5259 MAASLRVPFTAAQWQELERQTIIYKYMMASVPIPPELLIPISRSLSDVTASHSNRSLDLRFPNSSDPEPWRCRRTDGKKWRCSRDVAPDQKYCERHTHKGRPRSRKPVELHSELINNSATTTATTTSSNNKQPLNLPADTTKSFQDRSHLLNQTEGHHTSAFTTLASAPPYGQVRWVRV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0285 179 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g0285 179 PANTHER GROWTH-REGULATING FACTOR 5 8 152 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi2g0285 179 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g0285 179 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi2g0285 179 Pfam WRC 67 109 IPR014977 -
Vvi2g0285 179 ProSiteProfiles WRC domain profile. 66 110 IPR014977 -
Vvi2g0285 179 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0285 Vvi-Chr2 2331495 2332154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0285 9 109 GRF Transcription Factor Family AT4G24150 64.286 2.60e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi2g0285 WRC 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0285 - - vvi:100258227 353.214