Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0278 ATGGATGGCGATGTGGCGACCTGGGAGTGGTACTACATGGTGTCTGTCACCAAGTCATTTGTGGTCGGAGATGGGGTTCTGGGCAGGGTGTTTAGCTCCGGCGCCTTTGTGTGGCTGACTGATCGTGAGCTACAATGCTATGATTGTGAAAGAGTGACTGAAGCTCGAATGAATGGGATTCGGACTCTGTTGTGTGTTTCAACCTCATGTGGCGTACTGGAATTGGGTTCTTTAGATATGATCAAGGAAGACTGGGGTCTGGTCTTGTTAGCCAAATCCCTATTCGGCTCAAAGCCATCCACCCAGGTGAGCCAAATCCAAATACCGGATCGCAACCTCTCCATCTTCGACATTGGAGCAGCCTCAGGAGTTCAAAGAGAGAGCCACGAAGGTAAGCAACAGAAAGACCATGATAAGAAAGACGCCGGCACCACCGTAGGCAGGTCATCTTCTGATTCCGGGCATTCTGATTCCGACGAACCATTCGCCTCGGCATTGACGGAGAACATCCGGCCCAAGAAGAGAGGAAGAAAGCCTGCAACCGGGCGAGAGATGCCTCTAAACCACGTGGAGGCGGAGAGGCAGCGGCGGGAGAAGCTTAACCACCGCTTCTATGCGCTCCGGGCAGTCGTCCCCAATGTGTCGAGGATGGACAAAGCATCTCTCCTTGCAGATGCAGTTTCATACATCCATGAGCTCAAAACCAAAATTGACGACTTGGAAACAAAACTCCGAGAAGAAGTGCGAAAACCAAAGGCGTGTCTAGCCGAGATGTATGATAATCAAAGCACAACCACAACCAGCATTGTTGATCATGGAAGATCATCTTCAAGCTATGGTGCAATTAGGATGGAAGTAGACGTGAAGATTATAGGGTCTGAAGCCATGATAAGGGTTCAGTGTCCCGATCTAAATTACCCTTCTGCAATCTTAATGGATGCACTTCGAGACCTGGATCTTCGAGTTCTTCACGCAAGCGTATCCAGCGTCAAGGAGCTGATGCTTCAAGATGTTGTGGTCAGAATCCCCGAAGGGTTGACGAGTGAAGAGTCCATGAGGACTGCAATACTCAAAAGAATGCAGTAA 1086 0.4972 MDGDVATWEWYYMVSVTKSFVVGDGVLGRVFSSGAFVWLTDRELQCYDCERVTEARMNGIRTLLCVSTSCGVLELGSLDMIKEDWGLVLLAKSLFGSKPSTQVSQIQIPDRNLSIFDIGAASGVQRESHEGKQQKDHDKKDAGTTVGRSSSDSGHSDSDEPFASALTENIRPKKRGRKPATGREMPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLADAVSYIHELKTKIDDLETKLREEVRKPKACLAEMYDNQSTTTTSIVDHGRSSSSYGAIRMEVDVKIIGSEAMIRVQCPDLNYPSAILMDALRDLDLRVLHASVSSVKELMLQDVVVRIPEGLTSEESMRTAILKRMQ* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0278 361 Pfam Helix-loop-helix DNA-binding domain 188 233 IPR011598 GO:0046983
Vvi2g0278 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 250 IPR036638 GO:0046983
Vvi2g0278 361 MobiDBLite consensus disorder prediction 146 163 - -
Vvi2g0278 361 MobiDBLite consensus disorder prediction 170 192 - -
Vvi2g0278 361 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 2 95 IPR025610 -
Vvi2g0278 361 Gene3D - 178 249 IPR036638 GO:0046983
Vvi2g0278 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Vvi2g0278 361 Coils Coil 223 250 - -
Vvi2g0278 361 MobiDBLite consensus disorder prediction 124 192 - -
Vvi2g0278 361 CDD bHLH_AtAIB_like 182 251 - -
Vvi2g0278 361 MobiDBLite consensus disorder prediction 128 145 - -
Vvi2g0278 361 PANTHER MYC 4 360 IPR045084 GO:0003700|GO:0006355
Vvi2g0278 361 SMART finulus 190 239 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0278 Vvi-Chr2 2286157 2287242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0278 2 83 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 37.349 2.16e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi2g0278 bHLH-MYC_N 4.1e-26 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0278 - K13422 vvi:100246135 709.138