Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0276 ATGGAGACATCGGAAAATATAGCGACAAGTATCAGGAAGATTAGAAAGAGGAAGTTCAGTGAGGAGCAAATCAGGTCACTGGAGTTCCTATTCGAGTCGGAGGCAAGGCCTGAGGCACAGTTAAAGCAGAAGGTGGCCTCTGAGTTGGGGCTTCACCCTCGTCAGGTTGCCATATGGTTTCAGAACAAGCGGGCTCGATCCAAGTCCAAGCAGATTGAGCAAGACTATGCTGTGCTGAAGGCTAGTTATGATAATCTGGCTTTACAGTTTGAGTCGCTGGAGAAAGAGAATCAGAACTTGGCCATACAGTTGCAGAGACTGAGAGATGGGCTGGAGAAACCTCGTGGGAAGGAAGATGAGGAATCGGAGATCGGGTACACTAATTCGGAAACGAAGGAAAGATACAACCCTGTGCTTCAAGGAAGAATTGAGTACTTTGCTGAAGATACACACACTCCTAAGATGGAAGAACAGACGAATAGTTCCCTGACATCTTCTGCAGATTTAGGAATTTTTAAGTCTAGTTGCTTTCAAGATCAATCGAATTGTAGTTCACAGTGGTGGGAGTTGTGGTCTTGA 579 0.4577 METSENIATSIRKIRKRKFSEEQIRSLEFLFESEARPEAQLKQKVASELGLHPRQVAIWFQNKRARSKSKQIEQDYAVLKASYDNLALQFESLEKENQNLAIQLQRLRDGLEKPRGKEDEESEIGYTNSETKERYNPVLQGRIEYFAEDTHTPKMEEQTNSSLTSSADLGIFKSSCFQDQSNCSSQWWELWS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0276 192 Coils Coil 76 110 - -
Vvi2g0276 192 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
Vvi2g0276 192 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 176 IPR045224 GO:0003700
Vvi2g0276 192 SMART HOX_1 13 74 IPR001356 GO:0003677
Vvi2g0276 192 Gene3D - 7 77 - -
Vvi2g0276 192 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Vvi2g0276 192 Pfam Homeodomain 15 68 IPR001356 GO:0003677
Vvi2g0276 192 SUPERFAMILY Homeodomain-like 11 79 IPR009057 -
Vvi2g0276 192 CDD homeodomain 13 71 IPR001356 GO:0003677
Vvi2g0276 192 Pfam Homeobox associated leucine zipper 70 111 IPR003106 GO:0006355|GO:0043565
Vvi2g0276 192 FunFam - 7 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0276 Vvi-Chr2 2249340 2250006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0276 18 192 Homeobox Transcription Factor Family AT3G61890 42.857 1.91e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi2g0276 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0276 K09338 - vvi:100241028 383.259