LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0253	ATGTTGTTATTCAGATATCGGAAGAAGCATAAGAATGTTGACCTCAAGGCCATCAAGAACTGGGCGAAGCAGATCCTTCGAGGTTTACACTATCTCCACAGTCACAATCCGCCCATTATTCATAGGGATTTAAAATGTGATAACATTTTTGTTAATGGTAATAATGGAGAAGTTAAAATTGGAGATCTGGGTTTGGCAATTGTCATGCAGCAACCTACTGCACGAAGTGTTATTGGTACTCCAGAGTTCATGGCACCAGAGCTTTATGAAGAGGAATATAATGAACTCGTTGACATATATTCTTTTGGCATGTGCATATTAGAGTTGGTTACATGTGAATACCCATATAATGAATGCAAAAATCCTGCACAAATATATAAGAAGGTTTCTTCGGGTATAAAGCCTGCTTCCCTTGGTAAAGTGAGTGACCCCCAAGTCAAGCAGTTCATAGAGAAGTGTTTGGTTCCAGCATCCTTGAGATTGTCTGCACAAGAGCTCTTAAAGGACGCATTCTTCGCCACAGAAAATTCAAAGGAGCCTGTTTACAATCACATGCAGTTATTCAATTCTGCGCACAACTCATTTAACTTGCCAGAGTCTCAATCCCATGGCATGGACCTAGACCCTAAGGCTGATAAGCTTTCAGTGAGCACTCATAAGAGTAGTGTGGATGATTCTCTGCAGTCATCCAATTTTATGCCCAATCTGATGAACTTGCCTAAGCCTGAATTGCAGCCCATGGACATGGATCCTAACTACAAGAAGCTTTCAGTGAGCACTCACATGAAAAGCATCAGTGGAACTCCTCATTTTCGTGCTCTACAATTTGAGAGGTTCAACAAAAATAATCTCTTCAAGTTAAGAGGGGAGAAAATTGATGATAATTCAATCTCAATGACCTTGCACATAGCTGATCCATGTGGTCGAGCAAAGAATATCCATTTTGCATTTTATCTTGATTCTGATACTGCACTTTCAATAGCTGGTGAGATGGTTGAACAACTGGATTTGTATAATGAAGATGTGGCAGTCATAGCTGAGTTAATTGATGTTATGATATCCGAGCTTGTACCCACATGGAAACCTGCATTTGAGAGCATGTTATGTGGAGCAAATAGTTCATGTGAGGATTCTCTTGTACTTCACAATGGTGGAACCTCATTGAGGCATCCTAGTGATTCAGGTTCAGCTAAGGGTACATCAGATGCAGTTACTGAACATCTTATCTCACTGTCGGCCAATGGGGAAGAACAGAGCACTGTGGAGTCTGCTCTTTCAGGAATGTCAACTAAAGATGATGCCACAGTTGCTTCGGATGCAAATGACATCAAATCTTTGGAATGCCCTGATGATGAATGCTATGAAGCTTCGGACAGATGTTGTTTCAATGGAGATCGTCAGGTACTTGATCATGAAAGGCATAAAGAAGGAAGATACAACGGTAATATTGGTGAACCTGTTGCTATGAATGGATTCACTAAGGACTGGGAGATATCCTGCATTGAATCATGCTCTGGGATGTCTAACAGTTTGAGCCTGTCAAGCATCTGTTCTCTATCCCTAGCAGACAAAGATCCAAGTGATGAACTAAAGCTGGAGGTTGACACAATCGATACACAGTATCACCAGTGCTTTCAGGAACTCTTGAGGATGAGGGAGGAAGCAATAGAGAAAGCCAAGAATAGGTGGATCACAAAAAGTAGATACCAACCTCTTCTTTGA	1722	0.4117	MLLFRYRKKHKNVDLKAIKNWAKQILRGLHYLHSHNPPIIHRDLKCDNIFVNGNNGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILELVTCEYPYNECKNPAQIYKKVSSGIKPASLGKVSDPQVKQFIEKCLVPASLRLSAQELLKDAFFATENSKEPVYNHMQLFNSAHNSFNLPESQSHGMDLDPKADKLSVSTHKSSVDDSLQSSNFMPNLMNLPKPELQPMDMDPNYKKLSVSTHMKSISGTPHFRALQFERFNKNNLFKLRGEKIDDNSISMTLHIADPCGRAKNIHFAFYLDSDTALSIAGEMVEQLDLYNEDVAVIAELIDVMISELVPTWKPAFESMLCGANSSCEDSLVLHNGGTSLRHPSDSGSAKGTSDAVTEHLISLSANGEEQSTVESALSGMSTKDDATVASDANDIKSLECPDDECYEASDRCCFNGDRQVLDHERHKEGRYNGNIGEPVAMNGFTKDWEISCIESCSGMSNSLSLSSICSLSLADKDPSDELKLEVDTIDTQYHQCFQELLRMREEAIEKAKNRWITKSRYQPLL*	574

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi2g0253	573	ProSiteProfiles	Protein kinase domain profile.	1	172	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi2g0253	573	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	311	353	IPR024678	GO:0004674\|GO:0005524
Vvi2g0253	573	SUPERFAMILY	Protein kinase-like (PK-like)	3	237	IPR011009	-
Vvi2g0253	573	Gene3D	-	295	381	-	-
Vvi2g0253	573	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	39	51	IPR008271	GO:0004672\|GO:0006468
Vvi2g0253	573	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	5	556	-	-
Vvi2g0253	573	SMART	serkin_6	1	172	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi2g0253	573	Gene3D	Transferase(Phosphotransferase) domain 1	2	179	-	-
Vvi2g0253	573	Pfam	Protein kinase domain	3	172	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi2g0253	573	FunFam	probable serine/threonine-protein kinase WNK9	2	177	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0253	Vvi-Chr2	2097386	2099353	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0253	479	568	MAP Kinase Kinase Kinase	AT5G41990	38.889	5.62e-12	66.6

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vvi2g0253		Pkinase	3.7e-35	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0253	K08867		-	vvi:100246117	1133.24

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