Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0253 ATGTTGTTATTCAGATATCGGAAGAAGCATAAGAATGTTGACCTCAAGGCCATCAAGAACTGGGCGAAGCAGATCCTTCGAGGTTTACACTATCTCCACAGTCACAATCCGCCCATTATTCATAGGGATTTAAAATGTGATAACATTTTTGTTAATGGTAATAATGGAGAAGTTAAAATTGGAGATCTGGGTTTGGCAATTGTCATGCAGCAACCTACTGCACGAAGTGTTATTGGTACTCCAGAGTTCATGGCACCAGAGCTTTATGAAGAGGAATATAATGAACTCGTTGACATATATTCTTTTGGCATGTGCATATTAGAGTTGGTTACATGTGAATACCCATATAATGAATGCAAAAATCCTGCACAAATATATAAGAAGGTTTCTTCGGGTATAAAGCCTGCTTCCCTTGGTAAAGTGAGTGACCCCCAAGTCAAGCAGTTCATAGAGAAGTGTTTGGTTCCAGCATCCTTGAGATTGTCTGCACAAGAGCTCTTAAAGGACGCATTCTTCGCCACAGAAAATTCAAAGGAGCCTGTTTACAATCACATGCAGTTATTCAATTCTGCGCACAACTCATTTAACTTGCCAGAGTCTCAATCCCATGGCATGGACCTAGACCCTAAGGCTGATAAGCTTTCAGTGAGCACTCATAAGAGTAGTGTGGATGATTCTCTGCAGTCATCCAATTTTATGCCCAATCTGATGAACTTGCCTAAGCCTGAATTGCAGCCCATGGACATGGATCCTAACTACAAGAAGCTTTCAGTGAGCACTCACATGAAAAGCATCAGTGGAACTCCTCATTTTCGTGCTCTACAATTTGAGAGGTTCAACAAAAATAATCTCTTCAAGTTAAGAGGGGAGAAAATTGATGATAATTCAATCTCAATGACCTTGCACATAGCTGATCCATGTGGTCGAGCAAAGAATATCCATTTTGCATTTTATCTTGATTCTGATACTGCACTTTCAATAGCTGGTGAGATGGTTGAACAACTGGATTTGTATAATGAAGATGTGGCAGTCATAGCTGAGTTAATTGATGTTATGATATCCGAGCTTGTACCCACATGGAAACCTGCATTTGAGAGCATGTTATGTGGAGCAAATAGTTCATGTGAGGATTCTCTTGTACTTCACAATGGTGGAACCTCATTGAGGCATCCTAGTGATTCAGGTTCAGCTAAGGGTACATCAGATGCAGTTACTGAACATCTTATCTCACTGTCGGCCAATGGGGAAGAACAGAGCACTGTGGAGTCTGCTCTTTCAGGAATGTCAACTAAAGATGATGCCACAGTTGCTTCGGATGCAAATGACATCAAATCTTTGGAATGCCCTGATGATGAATGCTATGAAGCTTCGGACAGATGTTGTTTCAATGGAGATCGTCAGGTACTTGATCATGAAAGGCATAAAGAAGGAAGATACAACGGTAATATTGGTGAACCTGTTGCTATGAATGGATTCACTAAGGACTGGGAGATATCCTGCATTGAATCATGCTCTGGGATGTCTAACAGTTTGAGCCTGTCAAGCATCTGTTCTCTATCCCTAGCAGACAAAGATCCAAGTGATGAACTAAAGCTGGAGGTTGACACAATCGATACACAGTATCACCAGTGCTTTCAGGAACTCTTGAGGATGAGGGAGGAAGCAATAGAGAAAGCCAAGAATAGGTGGATCACAAAAAGTAGATACCAACCTCTTCTTTGA 1722 0.4117 MLLFRYRKKHKNVDLKAIKNWAKQILRGLHYLHSHNPPIIHRDLKCDNIFVNGNNGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILELVTCEYPYNECKNPAQIYKKVSSGIKPASLGKVSDPQVKQFIEKCLVPASLRLSAQELLKDAFFATENSKEPVYNHMQLFNSAHNSFNLPESQSHGMDLDPKADKLSVSTHKSSVDDSLQSSNFMPNLMNLPKPELQPMDMDPNYKKLSVSTHMKSISGTPHFRALQFERFNKNNLFKLRGEKIDDNSISMTLHIADPCGRAKNIHFAFYLDSDTALSIAGEMVEQLDLYNEDVAVIAELIDVMISELVPTWKPAFESMLCGANSSCEDSLVLHNGGTSLRHPSDSGSAKGTSDAVTEHLISLSANGEEQSTVESALSGMSTKDDATVASDANDIKSLECPDDECYEASDRCCFNGDRQVLDHERHKEGRYNGNIGEPVAMNGFTKDWEISCIESCSGMSNSLSLSSICSLSLADKDPSDELKLEVDTIDTQYHQCFQELLRMREEAIEKAKNRWITKSRYQPLL* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0253 573 ProSiteProfiles Protein kinase domain profile. 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0253 573 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 311 353 IPR024678 GO:0004674|GO:0005524
Vvi2g0253 573 SUPERFAMILY Protein kinase-like (PK-like) 3 237 IPR011009 -
Vvi2g0253 573 Gene3D - 295 381 - -
Vvi2g0253 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Vvi2g0253 573 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 556 - -
Vvi2g0253 573 SMART serkin_6 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0253 573 Gene3D Transferase(Phosphotransferase) domain 1 2 179 - -
Vvi2g0253 573 Pfam Protein kinase domain 3 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0253 573 FunFam probable serine/threonine-protein kinase WNK9 2 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0253 Vvi-Chr2 2097386 2099353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0253 479 568 MAP Kinase Kinase Kinase AT5G41990 38.889 5.62e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi2g0253 Pkinase 3.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0253 K08867 - vvi:100246117 1133.24