Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0252 ATGGGGCGCGGGAAGATAACGATCAAGAAGATTGAGGACAAAACTGTGAGGCAAATCACCTTCTCAAAGCGAAGAGCAGGGCTGCTGAAGAAGACCCATGAACTTTCTGTGCTCTGCGATGCTCAGATTGGGCTCATCATCTTCTCAAACACAGGGAAGATGTTCGAGTACTGCAGCAACTCATCAAGAATGGAGCAAATAGTAGAAAGATATCAGAAAGCTAAGGGGACATTTAAACATGATAACAAGCTGAAAATACACCATATTGATGAGCTGAAAAGGATAAGAGATGAAACTCATCATCTTCAATTGACCTTACAACACCACTCCACCACTCATGACTTGAGCTCCATAAGATATGAGGATTTGGAGGAGCTTGAACAACAGCTAGAGCACTCAATGAACAAGGTCCGCGTCCTCAAGGCTCAAGAGGGACAAACTGCATTAGTCCATCAGGCAACCACAACCAAATCAAACCAGGTGGAACACCAACAACAACATCAAGTAGTGCTGGATCAGTATCTGCCATTGTTTAGAGAGCAACCCAGCAATGCCGTCCTTCAGCTTGTGCCCATCCCTCCTCAGTTTCACCCATATCATTATCTCCCAGGAAGCTATTGA 621 0.4493 MGRGKITIKKIEDKTVRQITFSKRRAGLLKKTHELSVLCDAQIGLIIFSNTGKMFEYCSNSSRMEQIVERYQKAKGTFKHDNKLKIHHIDELKRIRDETHHLQLTLQHHSTTHDLSSIRYEDLEELEQQLEHSMNKVRVLKAQEGQTALVHQATTTKSNQVEHQQQHQVVLDQYLPLFREQPSNAVLQLVPIPPQFHPYHYLPGSY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0252 206 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi2g0252 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 Pfam K-box region 90 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g0252 206 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Vvi2g0252 206 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g0252 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi2g0252 206 Coils Coil 120 143 - -
Vvi2g0252 206 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vvi2g0252 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vvi2g0252 206 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0252 Vvi-Chr2 2093246 2094411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0252 1 143 MADS-box Gene Family AT5G23260 53.425 6.62e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi2g0252 K-box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0252 - - vvi:100263274 360.147