Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0248 ATGGGTGGAGCAGTGAAGATGGAGTCTGTGCTGAAGAAGACGCTCAAGAGTCTCTGCTGCAGTAACGGTTGGACTTATGGGGTTTTCTGGCGTTTTGATGAGCGAAATTCCATGTTGTTGACCTCGGAAGATGCCTATTATGATGAGCAAATGGGGGTTGTGATTGACAGCATGCTTTCTAAGGTCCATACGCTGCGTGAAGGAATAATTGGTCAAGTTGCTTTCACCGGGAAGCACTGTTGGGTATTCTCAGATGCTCAGAGTGGAGAGTGGAATTCTTTGTGCTCAATTGATGGTGAAGATATATCCCAGGATGATTCTGAGATTCATCGTCAATTCTCCTCGGGAATAATAAAGACAATTGCAGTAATTCCTGTGGAACCACGAGGAGTGGTACAGTTTGGATCCAACCAGAAGATTGTGGAGAGGTTGGAATTTTTGGATCTAACAAAAAGATTGTTCCGAGAGATGGAAAACATTGATGGGCTTATGGTGTTGAGCAATGCACCTTCTGCTTTGAACAGTGAAATTTATGATCCAAGTGGATTCTTCTCTTCCTTAATTTCATCTGGAAGCTCCAATCTTGGGAATATCAAATCTGAGCATGGCAATGGCCATAAAGAGCTGATAGAAAAAGCTTCTGCTTCAACAAATCTTACTCAGTCTTCCTCTTTTACTCCTGAAATGCAACATGAAAGGATAACCTCCATGATTAGTAGCACATCCCATCTTAGAAACCAGTTGCAAACAGCTGGCTTAGAAGCTCAGTTCATGCTGTCTGATCAGCCTAATTCTCAGATACAGCAGATGTTTTTACAGTCAGCCTCTTCTGTCAACAACCCAGCTGCTAGAACCCCTTGCATCAGTACATGGAGTAGTGAGGGTTCTACTCTGACTTCACTTGAGCGACAACTGTCATCTGAAATGAGGGCTCAAGTTTCTCAAAATGCAGTTCCTGGAAAACCAAATACTGTTGCACTTTGGGGGAACCTGGTTCAGGATTCTCAAGTGGACTCAATGTTTACTTCACTAGAAAGCACAGAAAGATTGATTGATGAAGAGAAGGATTTTCAATGCAGGCTGGGAAAATCAGTGAACAACCAGTATGCTGCTCCATTTATCCATGCGACCGAAGGTGAACTTCTGGAACAATCAACTAGCATACTTACGCTCCCTGAGGAGTGTAAGCCAGTTGATTTTAAAACAGACCCATCCAAATCCTACTCTGTGGATAACCTTTCTCAGTGGTTTGGTCCCCCGCGAGAGCAGAGCATCAAAGGAATGGCTTCAATGTTGACTAATGACCAGTCACAATCAGTGGGGATTACTTCATTATCCTCTGGTTTGGACAGAAGTGATTTTCTCGTTGACTTTCCAGTCAAACATCCAGCAAGTTCTATGCAAAGTTCCGTCATTAATATGTTCAGCTCTGATGGAAAGGAGAGATCTTTGAATGTGCCCAGCACTGAAAATGATCTGTTTGATGGTCTGGGGCTGGATTTTGGGTTTGAACTGGCAGGGGAGTCTTGGGAAGATTTTATAATGCCTCTATTTAATGATGGTCAATCAACTCTTAGTACTGGTGTTTCAGAATGCATTTCAGAGTTGGATGTTGGTTCCATGGCTGTCCCCAGGAAAGGGTTATTCTCTGAATTAGGACTTGACCAGCTTCTAGATGATATCGTTGGCAATTCTAGTTCTGTTACTAAATCTAATTCTGAGGATCAATTCTCCTCTACTAAAAGAAGAAGACTTGGAAGTTCCTCGGTTAACAGTAACCAAGTTCAGTCTGCGGGTCTTTCTTCTTGCTTCAGTGGGAGCATGAATGTAATGCAACCTGTGTACAACCTGGATAAGACCAACAGTCTTGTACCCAAAAAAGAGGTCATCCCAAAATCGCAGGTAGGCTTATGGATTGATGACAGCTATAGCATCAATGCTGGAGGTTCTGTTGCAGCACAACCTAAGAGGCCGGTGGAGCCTGCCAAGGCCACCAAGAAAAGGGCTAAACCTGGGGAAAGTACTCGACCAAGGCCCAAAGACCGGCAGCAAATCAAAGACCGTCTTGAAGAGTTGAGAGGGATCATTCCTAATGGTAGCAAGTGTAGCATAGATGTTTTGCTGGATCGCTCCATCAAACACATGCTTTTCTTGCAAAGCGTGACAAAATATGCTGACAAACTTAAACAAGTAGATGAGCCAAAGCTGATTGGCCACGAGAATGGAGTGGTTCTGAAAGACAACTCTAGTGGAGGCAGTGGCAACAGCGGCGGTGGTGCTACATGGGCATTTGAAGTCAGTGGTCAAACAATGGTTTGCCCAATTAGAGTTGAGGATCTTAATCCACCTGGCCAAATGCTTATAGAGATGCTTTGTGAAGAACAGGGGTTCTTTCTTGAAATAGCAGACATAATTCGCAGTTTTGGCTTGAATATCTTGAAGGGAGTGATGGAAGTTCGAGAGAACAAGATATGGGCACGCTTCATTGTTGAGGCAAACAGGCATGTAACAAGAATGGATATATTCCTTTCCCTTGTTCAGCTTCTACAAGAGACAGCAACTACTGGGGTCAGTCCAACTAATCAACCTAGTAATGTCATCGATAGTGGGGTTCCTCCATTCAACAATTACCAGCAACCTTCAGGGCCACTTCCCATCAGCTTGGCTGAGACTCTTCGGTGA 2682 0.4389 MGGAVKMESVLKKTLKSLCCSNGWTYGVFWRFDERNSMLLTSEDAYYDEQMGVVIDSMLSKVHTLREGIIGQVAFTGKHCWVFSDAQSGEWNSLCSIDGEDISQDDSEIHRQFSSGIIKTIAVIPVEPRGVVQFGSNQKIVERLEFLDLTKRLFREMENIDGLMVLSNAPSALNSEIYDPSGFFSSLISSGSSNLGNIKSEHGNGHKELIEKASASTNLTQSSSFTPEMQHERITSMISSTSHLRNQLQTAGLEAQFMLSDQPNSQIQQMFLQSASSVNNPAARTPCISTWSSEGSTLTSLERQLSSEMRAQVSQNAVPGKPNTVALWGNLVQDSQVDSMFTSLESTERLIDEEKDFQCRLGKSVNNQYAAPFIHATEGELLEQSTSILTLPEECKPVDFKTDPSKSYSVDNLSQWFGPPREQSIKGMASMLTNDQSQSVGITSLSSGLDRSDFLVDFPVKHPASSMQSSVINMFSSDGKERSLNVPSTENDLFDGLGLDFGFELAGESWEDFIMPLFNDGQSTLSTGVSECISELDVGSMAVPRKGLFSELGLDQLLDDIVGNSSSVTKSNSEDQFSSTKRRRLGSSSVNSNQVQSAGLSSCFSGSMNVMQPVYNLDKTNSLVPKKEVIPKSQVGLWIDDSYSINAGGSVAAQPKRPVEPAKATKKRAKPGESTRPRPKDRQQIKDRLEELRGIIPNGSKCSIDVLLDRSIKHMLFLQSVTKYADKLKQVDEPKLIGHENGVVLKDNSSGGSGNSGGGATWAFEVSGQTMVCPIRVEDLNPPGQMLIEMLCEEQGFFLEIADIIRSFGLNILKGVMEVRENKIWARFIVEANRHVTRMDIFLSLVQLLQETATTGVSPTNQPSNVIDSGVPPFNNYQQPSGPLPISLAETLR* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0248 893 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 669 718 IPR011598 GO:0046983
Vvi2g0248 893 MobiDBLite consensus disorder prediction 565 593 - -
Vvi2g0248 893 MobiDBLite consensus disorder prediction 856 893 - -
Vvi2g0248 893 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 154 IPR025610 -
Vvi2g0248 893 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 49 IPR025610 -
Vvi2g0248 893 MobiDBLite consensus disorder prediction 660 684 - -
Vvi2g0248 893 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 881 IPR043561 GO:0003700|GO:0006355
Vvi2g0248 893 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 682 724 IPR036638 GO:0046983
Vvi2g0248 893 MobiDBLite consensus disorder prediction 856 885 - -
Vvi2g0248 893 MobiDBLite consensus disorder prediction 649 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0248 Vvi-Chr2 2064381 2069808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0248 491 856 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 43.935 7.22e-79 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0248 - - vvi:100247886 1719.9