Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0244 ATGGACAAAGCTGGAGCAGCCAAGTCATGCACACTTGGTGACAGGAGTACTAGCGACATTACCGTACGACTGACTAATAGAGAAGGCAGGCCGGAATGGTTCTACTCTCACTCTTCCATTCTTATAAACAAGAGCAAGTTCTTTGCAGACCAGCTCTCTCATCTGGATTCTACAGCTTGCATCGAGATTCACTGCTCAGATTTTGATTATGATCATCACGTTAGTCTTTTGAGGCTGCTCTATCTGCCTGAGGATTCAGTTGTTGACTCTTTCGATTCTGTTAAGACTGCTATTGGGATTCTTCAGGTGGCTGTTGCCTTACACTGTGAAGAAATCACACGGAGTTGCATCCAGTACTTGGAGGCTATTCCCTGGGAGGACAAGGAAGAGGAGGAGATCTTAAAAGCAGTTTCGAAACTGGGTCCAGTAGCCATGCCCATAGTGGCCAGGTTACAACCTGTAGATCTAAGCACCACAAGAAATGTTTTTGTTTCTGCAATTCGATTTGCCACATCCATTGCAGCACCCTGTCTTCCTTTTGGAGATGAGCTTAAAACTTCTGCTCAGGAACAAGTAGAATACATGCTTGGGGAAGATGAAGATACATCACTGATTACAGCAGATGATGAAGTAAAATTGGTGGTAAAAATGGGCCTTTCCCAGATTTGTTCTTCATTCGAAAAGGAATTATCTTCATTGCTTTTGGAGTCTGATCTTACATCTGAGGCAGTGGAAGATAGAGTACTGAGGAGCCTATCAGACCTTGAATGGATGTGTAATATACTTCCCAAGATGGATTTGATGAAGGAATTTGTTTCTAACTGGACTGAAATCTCTGGACGCATTTTGACAGTGGTTGAGGACAGGAAACTTGATTCTCTCATGTGGGGTTTGAAAGTAAAGCTGATAGAAGTGACAGGAAAGGTCTTGGAAGCAGTTGGCTATGGCAATGTGATTCTTCCTCCCCCATGCCGGGTGCAATTGCTGAAGACCTGGCTTCCCTACATAAGAAAAATGAAGCCTCTTTTGGATTCAAAAGGACATGAAGACCTGGGTTTTCCCCACAAAATGGATGAGGACCTGTGTGAAAGCATTGAAGGCGCAATTATCTCACTGATACTGGCACTGCCATCAAACGATCAAGCTGATATTCTGGCAGACTGGATGAAGACTGAGCAGGTGAGGTATCCTGATTTGAGCGAAGCTTTTGAGGTCTGGTGTTACAGAACCAAGTCTGCAAAGAGAAGACTGGTGGAGGGGCTGGACAAAGTCGGCAACGCTGCAGTCAGCCTTTGA 1296 0.4468 MDKAGAAKSCTLGDRSTSDITVRLTNREGRPEWFYSHSSILINKSKFFADQLSHLDSTACIEIHCSDFDYDHHVSLLRLLYLPEDSVVDSFDSVKTAIGILQVAVALHCEEITRSCIQYLEAIPWEDKEEEEILKAVSKLGPVAMPIVARLQPVDLSTTRNVFVSAIRFATSIAAPCLPFGDELKTSAQEQVEYMLGEDEDTSLITADDEVKLVVKMGLSQICSSFEKELSSLLLESDLTSEAVEDRVLRSLSDLEWMCNILPKMDLMKEFVSNWTEISGRILTVVEDRKLDSLMWGLKVKLIEVTGKVLEAVGYGNVILPPPCRVQLLKTWLPYIRKMKPLLDSKGHEDLGFPHKMDEDLCESIEGAIISLILALPSNDQADILADWMKTEQVRYPDLSEAFEVWCYRTKSAKRRLVEGLDKVGNAAVSL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0244 431 Gene3D Potassium Channel Kv1.1; Chain A 8 123 IPR011333 -
Vvi2g0244 431 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 11 419 IPR038920 -
Vvi2g0244 431 ProSiteProfiles BTB domain profile. 18 89 IPR000210 GO:0005515
Vvi2g0244 431 SUPERFAMILY POZ domain 15 120 IPR011333 -
Vvi2g0244 431 Pfam BTB/POZ domain 16 121 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0244 Vvi-Chr2 2020705 2022000 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi2g0244 BTB 2.3e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0244 - - vvi:100249644 838.565