Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0232 ATGACTGAAGTAGCGAGCTCAGTGATCCACGAAGTGCTAGGGCGGAGAGCTCTGGATGTGGATCAGCCAATCATCGACTACATCGTCAACGTCCTAGCCGATGATGACTTCGATTTCGGCTTCCAAGGCGAAGGCGCCGTCGACGCCATCGGAGAACTCCTCGTTGACTCCGGATGCGTCTCCGATGACGCTGAATGCCGCTCTGTTTGCAGCATACTATGTGAAAAATTTGGAAAGCATGGATTGGTTAAGCCAAAACCTGCTGTGCGAAGCCTTGCAGCGCCCTTGAGAATGTTTGATGGAATGGATGAAGAGGAAGTTCCAAAGAAGAAACCTGAGGTGACTGATGGTCCAATTCTAACTGAGCGTGACCGAGCAAAGCTTGAAAGGAGAAAGAGAAAGGATGAGCGCCAAAGAGAGCAACAATACCAAATGCATTTAGCTGAGATGGAAGCTGCTAAAGCGGGAATGCCTGTTGTGTGTGTAAACCATGACAACAGTAGTGGACCAGCTATCAAGGATATCCATTTGGAGAACTTCAATATTTCCATAGGTGGTCGCGATCTCATTGTAGATGGTTCAGTCACACTCTCTTATGGAAGGCACTATGGCCTTGTAGGAAGAAATGGTACTGGCAAAACAACTTTCCTTAGGTACATGGCTATGCATGCTATTGATGGTATTCCTAAGAACTGCCAGATATTACATGTGGAGCAAGAAGTGGTTGGTGATGACATATCAGCGTTGCAATGTGTTCTTAACACTGATATTGAAAGAACCCAACTTTTGGAAGAAGAAGCTCACCTACTTGCGCAACAGCGAGAATTGGAGTTTGAAGGTGCAACTGGAAAGAGCCAAGGGGAACTGAATGGGGATATTGACAAAGATGTTGTTGGAAAAAGGCTTGAAGAGATATACAAAAGGCTTGAGTTCATTGATGCATACTCCGCTGAGTCGCGTGCAGGTTCCATTCTTGCGGGTCTCAGTTTCTCTCCAGAAATGCAGCATAAAGCGACAAAAACCTTTTCTGGAGGATGGCGAATGCGAATTGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATTTATTACTACTTGATGAACCCACGAACCATCTTGACCTTCATGCTGTTTTATGGCTGGAGACTTACCTGGTGAAATGGCCAAAAACAGTTATAGTTGTTTCTCATGCTAGAGAATTCTTGAACACGGTGGTCACTGATATTCTGCATTTACATGGGCAAAAATTGAACTCTTACAAGGGGGATTATGATACATTTGAGAGGACACGAGAGGAACAGCTCAAGAATCAACAGAAAGCATTTGAGTCAAATGAACGGTCTAGATCCCATATGCAGTCTTTCATCGATAAGTTCCGATACAATGCCAAGCGGGCAGCTCTTGTACAGTCAAGAATCAAGGCATTGGATCGGTTGGGTCATGTGGATGAGGTTATTAATGATCCTGACTACAAATTTGAGTTTCCAACTCCAGACGACAGACCAGGCCTCCCTATAATTAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAATGGTTGGGCCAAATGGCATTGGTAAATCAACTATACTCAAATTGATTGCAGGGGAACTTCAACCAAGCTCTGGAACGGTATTCCGTTCGGCCAAGGTTCGCATTGCTGTGTTCAGTCAACACCATGTTGATGGCCTAGACCTATCTTCAAATCCCCTTTTGTATATGATGCGCTGCTACCCAGGGGTGCCAGAACAGAAGCTCCGAGCTCATTTAGGTTCATTTGGTGTAACAGGAAATCTTGCTCTTCAGCCCATGTACACTTTATCTGGTGGTCAGAAAAGCAGAGTTGCATTTGCAAAAATAACTTTCAAAAAACCTCACATCATACTTCTTGATGAACCATCAAATCATCTTGATTTGGATGCTGTGGAGGCACTGATTCAAGGCCTTGTTCTGTTCCAAGGAGGCGTACTCATGGTCAGTCACGATGAGCATTTGATATCTGGAAGCGTAGAGGAGCTGTGGGTGGTTTCCGAAGGAAAGGTTTCCCCTTTCCATGGGACGTTCCACGATTACAAGAAGATACTTCAGTCATCGTAG 2151 0.4486 MTEVASSVIHEVLGRRALDVDQPIIDYIVNVLADDDFDFGFQGEGAVDAIGELLVDSGCVSDDAECRSVCSILCEKFGKHGLVKPKPAVRSLAAPLRMFDGMDEEEVPKKKPEVTDGPILTERDRAKLERRKRKDERQREQQYQMHLAEMEAAKAGMPVVCVNHDNSSGPAIKDIHLENFNISIGGRDLIVDGSVTLSYGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDISALQCVLNTDIERTQLLEEEAHLLAQQRELEFEGATGKSQGELNGDIDKDVVGKRLEEIYKRLEFIDAYSAESRAGSILAGLSFSPEMQHKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLVKWPKTVIVVSHAREFLNTVVTDILHLHGQKLNSYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQSFIDKFRYNAKRAALVQSRIKALDRLGHVDEVINDPDYKFEFPTPDDRPGLPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVEELWVVSEGKVSPFHGTFHDYKKILQSS* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0232 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 440 IPR027417 -
Vvi2g0232 716 Coils Coil 125 145 - -
Vvi2g0232 716 CDD ABCF_EF-3 506 698 - -
Vvi2g0232 716 MobiDBLite consensus disorder prediction 105 141 - -
Vvi2g0232 716 ProSitePatterns ABC transporters family signature. 342 356 IPR017871 GO:0005524|GO:0016887
Vvi2g0232 716 FunFam ABC transporter F family member 3 127 451 - -
Vvi2g0232 716 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524|GO:0016887
Vvi2g0232 716 FunFam ATP-binding cassette sub-family F member 3 468 716 - -
Vvi2g0232 716 SMART AAA_5 199 416 IPR003593 GO:0016887
Vvi2g0232 716 SMART AAA_5 531 698 IPR003593 GO:0016887
Vvi2g0232 716 Pfam ABC transporter 409 489 IPR032781 -
Vvi2g0232 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 438 IPR003439 GO:0005524
Vvi2g0232 716 Pfam ABC transporter 194 370 IPR003439 GO:0005524
Vvi2g0232 716 Gene3D - 128 451 IPR027417 -
Vvi2g0232 716 Gene3D - 469 716 IPR027417 -
Vvi2g0232 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 506 715 IPR003439 GO:0005524
Vvi2g0232 716 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 148 715 - -
Vvi2g0232 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 705 IPR027417 -
Vvi2g0232 716 CDD ABCF_EF-3 175 415 - -
Vvi2g0232 716 Pfam ABC transporter 523 653 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0232 Vvi-Chr2 1919757 1929083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0232 468 667 Calmodulin-binding Proteins AT2G36910 26.724 1.74e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0232 K06158 - vvi:100256523 1382.85