Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0223 ATGTCCGAACCAGACGAGGGGATTCGCAAGTCCCGAGACTGTCCTCCGCCATCCCAAGCCGTCGACCGCGACTCCTTCATGGACTTCGATCTCGATCTCGACGGGTCCTGGCCCTTGGACCAGATCTCCTTCGTCTCCAACCCTATGTCTCCCTTCCTCTTCTCCTCCTCCGACCAGCCCTGCTCTCCGCTCTGGGCCTTCTCCGACGATGCCGACGACAAGCCTTCCGCCATCGGCGTCGGCGGCGGTCTTCGTCTATCGGAATGTTCTCGGTTTCTCACATGTAATCCAGATTTGATACCTGAAAGCAGAACAGAGAATGATGAGAAAAGAAGGCTGCCTCCATCGGTTTTCACATTGACACCAATTGAGAATCCAGATGGGTGTTGCATAATTAAAGAGAGGATGACACAGGCTCTTCGATACTTCAAAGAATCTACTGAACAACATGTTCTAGCTCAGGTTTGGGCACCTGTGAAAAATGGGGATCGGTGTCTTCTCACAACATACGGACAGCCCTTTGTTCTTGATCCACATAGTAATGGCCTTCATCAGTACAGGATGATATCTCTGACATATACGTTTTCTGTTGATGGGGAGAGTGACGGAGCCCTCAGGCTTCCTGCTCGTGTTTTCAGGCAAAAATTGCCGGAGTGGACTCCAAATGTACAGTATTACTCCAGCAGAGAGTACTCTCGACTTAATCATGCTTTGCATTACAATGTAAGGGGAACATTGGCTTTGCCAGTGTTTGAACCTTCTGGGCCGTCCTGTGTGGGTGTACTAGAGCTCATTATGACTTCACAGAAGATTAACTATGCACCTGAGGTTGATAAAGTCTGCAAAGCGCTTGAGGCGGTAAATCTCAAAAGTTCAGAAATATTGGAGCATCCAAAGGCACAGAACCAGATTTGCAATGAAGGTCGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACAGTGGTATGTGAAACTTACAAATTACCTCTGGCTCAGACCTGGGTTCCTTGCAGGCATCGCAGTGTTCTAGCTGGTGGTGGTGGTCTGAGGAAGAGCTGCTCTAGCTTTGATGGAAGCTGCATGGGCCAAGTCTGCATGTCCACAACTGATGTAGCATTCTACGTTGTTGACGCTCACATGTGGGGTTTTAGGGAGGCCTGTGCTGAGCATCACTTACAAAAGGGGCAGGGGGTTGCTGGGAGGGCATTTGAGTCCCATAACTCATGCTACTGCAGCAATATTACCCAATTCTGCAAAACTGAGTACCCCTTAGTACACTATGCGCGCATGTTTGGGTTAACTTGCTGTTTTGCAATCTGTTTGCGAAGTACTCACACTGGAAATGATGATTACATTCTAGAGTTCTTTCTGCCCCCTAGTATCACAGACAGTAGAGACCAACAGACCTTGTTGGACTCCCTATTGGCAACAATGAAGCAGCATTTTCAGAGTCTTAGGGTTGCTTCTGGAAAAGAATTTGAAGAGGAGGAAAAATCTGTCGAAATTATCAAATTGCCTATGAATGGGAAGCTCGATTCAAGACTTGAATCTATTCAAATATCGCAATCTACTCCATCTCCACCTGGGCCTGATATCTTGCCAAGCAGGGGAGAGATGCAGCAGCTAGATTCCACAAAACATCAATTAATGGTGGAGTTTGATGCTATAAAGGATAGAGAGAATGTTGTAGGTGCGGGTGTAAGCCAAAATGCAGTTTCTTTCCCAGGGAACAAAGAAATACGAAAGCCATCAGAGAGAAAGCGTGGAAAAACTGAGAAATCAATTAGCTTAGAGGTCCTCCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAAAGCCTTGGTGTTTGCCCTACTACAATGAAGCGTATATGCAGGCAGCATGGAATCTCCCGGTGGCCATCTCGTAAGATCAACAAGGTTAATCGTTCCCTCTCTAAGCTAAAGCGTGTAATTGAATCTGTCCAGGTTTCTGAAAGAGCATTTGGTCTAACTTCTCTCACTTCAAGTCCACTCCCTGTCGCTGTTGGTTCCATTTCTTGGCCTGCTACTTTGAATGGACCGTATCAACAAAACTCCCCAGGTTCTAAATCTGCTGAACCCCAGGGAGAAAAGAGTGGATCACCCACCTGTAGGACCCCGGGAAGTGATGGTCAGGCTGAAACAGCAGCTCAATTTCATGAAGGTGGGAGATCGAGTCACAAGGAACTTATTCATGAGCAAAGTGGCTGTCTGCCAGAGCTGGGTAAGGGAGCAACTGGGTCGAAAACAAGGAGTGGGTCAAGGGAAGAGAGTGCTGGGACCCCCACTTCCCATGGTTCATGCCAAGGCAGCCCCGAAAATGAAACAACATCTGCGAAAAATCACTCCAATTCTCCCATCTACGACCAATGTGAAAAAGCAGTGGGCGGATTGGAATCAGCATTTCAACCAAGAGAACTGAGTCTATCAGCTGCATTCTCAATCCCTGAGGCTCTTATCACAACAGAACCCCAAACCCACTTTGGAGGAATGCTGATTGAGGATGCAGGAAGCTCAAAAGACTTGAGAAATCTGTGTCCTTCAGTAGCAGATGCCATGCTAGACGAGCGAGTCCCAGAGTCCAGTTGGACAAACCCCCCATGTTCTGATATTCCTCCCAAGCACACCATGAATGCTGTAGCTCACACCATCCCACAAATTACAGCTAGGCCAGATGTGAGGACCATGACCATAAAGGCCACCTACAGAGACGACATAATCAGGTTCCGAATCCCTCTGACCTCCGGCATCGTGGAGTTGAAGGAAGAAGTGGCGAAACGGCTCAAGTTAGAGGTGGGTACTTTCGATATCAAGTATCTCGATGATGATCACGAGTGGGTATTAATCGCCTGCAATGCAGACTTACAGGAGTGCATGGACATATCATGGACTACGGGCAGCAACATAATCAGGTTACTGGTTCAGGATCTAATGACCAATCTGGGTAGCTCCTGCGAAAGCACTGGGGAGTAA 3000 0.4763 MSEPDEGIRKSRDCPPPSQAVDRDSFMDFDLDLDGSWPLDQISFVSNPMSPFLFSSSDQPCSPLWAFSDDADDKPSAIGVGGGLRLSECSRFLTCNPDLIPESRTENDEKRRLPPSVFTLTPIENPDGCCIIKERMTQALRYFKESTEQHVLAQVWAPVKNGDRCLLTTYGQPFVLDPHSNGLHQYRMISLTYTFSVDGESDGALRLPARVFRQKLPEWTPNVQYYSSREYSRLNHALHYNVRGTLALPVFEPSGPSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPKAQNQICNEGRQNALAEILEIFTVVCETYKLPLAQTWVPCRHRSVLAGGGGLRKSCSSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFESHNSCYCSNITQFCKTEYPLVHYARMFGLTCCFAICLRSTHTGNDDYILEFFLPPSITDSRDQQTLLDSLLATMKQHFQSLRVASGKEFEEEEKSVEIIKLPMNGKLDSRLESIQISQSTPSPPGPDILPSRGEMQQLDSTKHQLMVEFDAIKDRENVVGAGVSQNAVSFPGNKEIRKPSERKRGKTEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVSERAFGLTSLTSSPLPVAVGSISWPATLNGPYQQNSPGSKSAEPQGEKSGSPTCRTPGSDGQAETAAQFHEGGRSSHKELIHEQSGCLPELGKGATGSKTRSGSREESAGTPTSHGSCQGSPENETTSAKNHSNSPIYDQCEKAVGGLESAFQPRELSLSAAFSIPEALITTEPQTHFGGMLIEDAGSSKDLRNLCPSVADAMLDERVPESSWTNPPCSDIPPKHTMNAVAHTIPQITARPDVRTMTIKATYRDDIIRFRIPLTSGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACNADLQECMDISWTTGSNIIRLLVQDLMTNLGSSCESTGE* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0223 999 Gene3D - 901 985 - -
Vvi2g0223 999 MobiDBLite consensus disorder prediction 756 794 - -
Vvi2g0223 999 SUPERFAMILY CAD & PB1 domains 904 988 - -
Vvi2g0223 999 MobiDBLite consensus disorder prediction 688 794 - -
Vvi2g0223 999 Pfam PB1 domain 904 985 IPR000270 GO:0005515
Vvi2g0223 999 MobiDBLite consensus disorder prediction 1 24 - -
Vvi2g0223 999 CDD PB1_NLP 905 985 IPR034891 -
Vvi2g0223 999 MobiDBLite consensus disorder prediction 688 722 - -
Vvi2g0223 999 Pfam RWP-RK domain 595 643 IPR003035 -
Vvi2g0223 999 ProSiteProfiles RWP-RK domain profile. 582 663 IPR003035 -
Vvi2g0223 999 PANTHER PROTEIN NLP8 57 998 IPR045012 GO:0003700
Vvi2g0223 999 SMART PB1_new 904 986 IPR000270 GO:0005515
Vvi2g0223 999 ProSiteProfiles PB1 domain profile. 904 986 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0223 Vvi-Chr2 1850689 1857255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0223 266 999 NLP Transcription Factor Family AT4G24020 54.899 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi2g0223 PB1 1.8e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0223 - - vvi:100263398 2021.13