Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0215 ATGGGTCTTCCTCAAACTCCGACTCCTACTCATCTCTATCCTGAAGCACTTCAACTTAAGCTTTACCAGGCCTTCATATTTTCAATCCCAATTCTCTTCTCCATTATTCTGTTTCTGCTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCACTTCCTCATCTACTGCACCAATACTTCCAAGCAGTATGAATCAAGCAGCTTCATTTCTCTCCCCATCATGTGAGATCGGTTTGAAGGGAGAGCTCAAAGGCAAGCTTCCAACAATCTTGTTTGATGACGAATTGAAGGCAAGGGACTCACTATGTTGTGTTTGCCTGGGAGAATTTGAAATCAAAGAGGAGTTACACCAGGTTCCGTCGTGCAAACATGTGTTTCATGCCGACTGCATATACCACTGGCTTCGTACAAACTCTACTTGTCCACTCTGTCGCTGCTCTGTCTTCCCCAATACCAAAGCAGGCAATCCAGTGTCCCCTGTTAGATCCGAGCATCCCGATAACCAGAACTCCAACCAGCACAGACAAAATGTCTCTTCACAGCAACAAGAAGAAAACATTGGTGTTAGGTTGGATATCTCTGATTCTTCCAGTGGACAGCAGATGGTACCAACAGACGGATCTTCTAGCTCGAGTTTAAGAGAGCCTGGCAGATCGTCTGAGTTGCCCACTTGCATGGACAGTGAAATGGGTTATCGGGACCAAGAATCAATTGTTCTTCACATTGAAACACACTCAGAAATCTGA 747 0.4511 MGLPQTPTPTHLYPEALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASTSSSTAPILPSSMNQAASFLSPSCEIGLKGELKGKLPTILFDDELKARDSLCCVCLGEFEIKEELHQVPSCKHVFHADCIYHWLRTNSTCPLCRCSVFPNTKAGNPVSPVRSEHPDNQNSNQHRQNVSSQQQEENIGVRLDISDSSSGQQMVPTDGSSSSSLREPGRSSELPTCMDSEMGYRDQESIVLHIETHSEI* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0215 248 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vvi2g0215 248 Pfam Ring finger domain 103 145 IPR001841 -
Vvi2g0215 248 SUPERFAMILY RING/U-box 85 152 - -
Vvi2g0215 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 152 IPR013083 -
Vvi2g0215 248 MobiDBLite consensus disorder prediction 157 218 - -
Vvi2g0215 248 MobiDBLite consensus disorder prediction 157 235 - -
Vvi2g0215 248 CDD RING-H2_EL5-like 103 145 - -
Vvi2g0215 248 PANTHER RING-H2 FINGER PROTEIN ATL16 24 210 IPR044600 GO:0016567|GO:0016740
Vvi2g0215 248 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0215 Vvi-Chr2 1812388 1814056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0215 3 150 C3H Transcription Factor Family AT4G10150 38.312 8.78e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0215 K19039 - vvi:100266728 469.159