Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g0182 | ATGGAACCAGAAACCAGACGCAGAATCGAGAAAACAGTGCTCGAGATCCTCAAAAGCGCGGACATGGACGAGATGACCGAGTTCAAAGTTCGAAAACTAGCTTCCGACAAACTTGGAATCAACCTCTCCGCCCCGGACTATAAGCGCTTCGTCCGCCAGGTCGTCGAGACCTTCCTTCAGTCCACCGAAGAACCTGGACGGGAACCGGAACCGGAACCGGAACCCGATCGGAAGAAGGCAAACACCGAAGCAGCTGAACGAGAACCGACAGAAGAGGAGGAGGAAGAGGAGGTGGAGGAGGATCGAGGAAAGAGTAGTGGTGTTAAGGAGTACGACGATGACGGCGATCTCATTATCTGTAGGCTATCTGATAGGAGAAGGGTGACAATTCAAGATTTCAGAGGGAAAACGCTGGTTTCAATCAGAGAATTCTATAGAAAAGATGGCAAAGAGCTTCCTTCCTCTAAAGGAATAAGCTTGACAGCAGAACAGTGGTCAGCCTTCAAGAAGAATGTACCCGCAATAGAGGAAGCCATCCAAAAGATGGAGTCAAGGTTGATGTGA | 564 | 0.4965 | MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPDYKRFVRQVVETFLQSTEEPGREPEPEPEPDRKKANTEAAEREPTEEEEEEEVEEDRGKSSGVKEYDDDGDLIICRLSDRRRVTIQDFRGKTLVSIREFYRKDGKELPSSKGISLTAEQWSAFKKNVPAIEEAIQKMESRLM* | 188 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g0182 | 187 | FunFam | RNA polymerase II transcriptional coactivator KELP | 109 | 185 | - | - | |
Vvi2g0182 | 187 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 109 | 186 | IPR009044 | GO:0003677|GO:0006355 | |
Vvi2g0182 | 187 | PANTHER | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR | 3 | 185 | IPR045125 | GO:0003713|GO:0060261 | |
Vvi2g0182 | 187 | Pfam | Transcriptional Coactivator p15 (PC4) | 120 | 171 | IPR003173 | GO:0003677|GO:0006355 | |
Vvi2g0182 | 187 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 119 | 181 | IPR009044 | GO:0003677|GO:0006355 | |
Vvi2g0182 | 187 | PIRSF | RNA_polymII_KELP | 1 | 186 | IPR017415 | - | |
Vvi2g0182 | 187 | MobiDBLite | consensus disorder prediction | 59 | 111 | - | - | |
Vvi2g0182 | 187 | Pfam | DEK C terminal domain | 5 | 59 | IPR014876 | - | |
Vvi2g0182 | 187 | MobiDBLite | consensus disorder prediction | 63 | 86 | - | - | |
Vvi2g0182 | 187 | SUPERFAMILY | DEK C-terminal domain | 4 | 60 | - | - | |
Vvi2g0182 | 187 | ProSiteProfiles | DEK C-terminal (DEK-C) domain profile. | 3 | 60 | IPR014876 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi2g0182 | Vvi-Chr2 | 1624485 | 1627665 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Coactivator p15 | Vvi2g0182 | DEK_C | 8.8e-15 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g0182 | K25815 | - | vvi:100242702 | 318.931 |