Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0182 ATGGAACCAGAAACCAGACGCAGAATCGAGAAAACAGTGCTCGAGATCCTCAAAAGCGCGGACATGGACGAGATGACCGAGTTCAAAGTTCGAAAACTAGCTTCCGACAAACTTGGAATCAACCTCTCCGCCCCGGACTATAAGCGCTTCGTCCGCCAGGTCGTCGAGACCTTCCTTCAGTCCACCGAAGAACCTGGACGGGAACCGGAACCGGAACCGGAACCCGATCGGAAGAAGGCAAACACCGAAGCAGCTGAACGAGAACCGACAGAAGAGGAGGAGGAAGAGGAGGTGGAGGAGGATCGAGGAAAGAGTAGTGGTGTTAAGGAGTACGACGATGACGGCGATCTCATTATCTGTAGGCTATCTGATAGGAGAAGGGTGACAATTCAAGATTTCAGAGGGAAAACGCTGGTTTCAATCAGAGAATTCTATAGAAAAGATGGCAAAGAGCTTCCTTCCTCTAAAGGAATAAGCTTGACAGCAGAACAGTGGTCAGCCTTCAAGAAGAATGTACCCGCAATAGAGGAAGCCATCCAAAAGATGGAGTCAAGGTTGATGTGA 564 0.4965 MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPDYKRFVRQVVETFLQSTEEPGREPEPEPEPDRKKANTEAAEREPTEEEEEEEVEEDRGKSSGVKEYDDDGDLIICRLSDRRRVTIQDFRGKTLVSIREFYRKDGKELPSSKGISLTAEQWSAFKKNVPAIEEAIQKMESRLM* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0182 187 FunFam RNA polymerase II transcriptional coactivator KELP 109 185 - -
Vvi2g0182 187 Gene3D Transcriptional Coactivator Pc4; Chain A 109 186 IPR009044 GO:0003677|GO:0006355
Vvi2g0182 187 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 185 IPR045125 GO:0003713|GO:0060261
Vvi2g0182 187 Pfam Transcriptional Coactivator p15 (PC4) 120 171 IPR003173 GO:0003677|GO:0006355
Vvi2g0182 187 SUPERFAMILY ssDNA-binding transcriptional regulator domain 119 181 IPR009044 GO:0003677|GO:0006355
Vvi2g0182 187 PIRSF RNA_polymII_KELP 1 186 IPR017415 -
Vvi2g0182 187 MobiDBLite consensus disorder prediction 59 111 - -
Vvi2g0182 187 Pfam DEK C terminal domain 5 59 IPR014876 -
Vvi2g0182 187 MobiDBLite consensus disorder prediction 63 86 - -
Vvi2g0182 187 SUPERFAMILY DEK C-terminal domain 4 60 - -
Vvi2g0182 187 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0182 Vvi-Chr2 1624485 1627665 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vvi2g0182 DEK_C 8.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0182 K25815 - vvi:100242702 318.931