Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0178 ATGGAAATTGACAGCATTGAATGCGTGTCGTCTACAGATGGGATCTATGAGGAAGAGATCCACCACCACCACCATCAGTTCTCGTCGTCCTCCAAGCCCCATAGCAATGTGGTGTCTCCGGCGATCTCTCCGGCCACCAGCGTCCACGAACTCCTCGAGTGCCCAGTTTGTACTAATTCCATGTACCCTCCAATTCACCAGTGCCACAATGGGCACACGTTGTGTTCCACCTGCAAATCAAGGGTCCACAATCGGTGCCCCACTTGCCGCCAAGAGCTTGGAGATATCAGGTGTCTAGCATTGGAGAAGGTGGCTGAGTCTCTTGAACTTCCTTGTAAATATTGCTCCTTGGGATGCCCAGAAATCTTTCCTTACTACAGTAAACTCAAGCATGAGGCTCAATGTAACTTCAGACCATACAACTGTCCATATGCTGGATCTGAGTGTGCTGTTGTTGGGGATATACCTTTCCTGGTTTCCCATCTTAGGGATGACCACAAGGTAGACATGCACACTGGCTGCACATTCAATCACCGTTATGTCAAGTCTAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTGACAGTCTTTAACTGTTTCGGTCAGTACTTCTGCCTGCATTTTGAAGCATTCCAGCTAGGAATGGCCCCAGTTTACATGGCATTCCTTCGGTTCATGGGTGATGAGATTGAGGCCCGGAACTTCAGTTACAGCCTAGAAGTGGGTGCAAATGGTAGAAAACTAATATGGGAGGGAACCCCACGAAGTATCCGCGACAGCCACAAAAAGGTCAGGGACAGCCACGATGGCCTCATAATCCAGCGCAACATGGCACTTTTTTTCTCTGGTGGGGACAGGAAGGAGCTGAAGCTTCGGGTCACAGGACGAATATGGAAGGAACAACAAAATCCAGATGCAGGGGTGTGCATACCCAATCTTTGTAGTTGA 951 0.4921 MEIDSIECVSSTDGIYEEEIHHHHHQFSSSSKPHSNVVSPAISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAQCNFRPYNCPYAGSECAVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEIEARNFSYSLEVGANGRKLIWEGTPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0178 316 CDD RING-HC_SIAHs 52 90 - -
Vvi2g0178 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 96 IPR013083 -
Vvi2g0178 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
Vvi2g0178 316 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Vvi2g0178 316 FunFam E3 ubiquitin-protein ligase SINAT5-like 163 295 - -
Vvi2g0178 316 CDD Sina 168 296 - -
Vvi2g0178 316 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Vvi2g0178 316 FunFam E3 ubiquitin-protein ligase SINAT3 11 105 - -
Vvi2g0178 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Vvi2g0178 316 SUPERFAMILY RING/U-box 48 94 - -
Vvi2g0178 316 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi2g0178 316 SUPERFAMILY TRAF domain-like 107 299 - -
Vvi2g0178 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 301 - -
Vvi2g0178 316 FunFam E3 ubiquitin-protein ligase SINAT3 106 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0178 Vvi-Chr2 1595287 1600464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0178 45 302 C3H Transcription Factor Family AT2G41980 81.008 1.72e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0178 K04506 - nnu:104604788 631.328