Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0177 ATGGAAGTGGAAGTATTTACAAATGACATGGCTGAGGATGATAGTTATGAAGTAGATGAGGATATTGATGCTTCGGGTTTGGAGGGTGAAAAATGTGGGATATGCATGGATATCATCATTGATAGGGGGGTTTTGGATTGCTGCCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACGATCACGAACCTTTGCCCACTTTGCCAGACTGAATTTCAATTGATCACATGTGTTCCAGTTTATGATACTATCGGAACTAGCAAGGTGGATGAAGACTCATTTCCCAGAGACGATGATTGGTCCATTGAAGGGAAGAATAACACTCTCTCGTTTCCATCATACTATATTGATGAAAATGCAGTTATCTGTCTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCTGCAACAATTACAGAAGATTCCAATCTTGATACATCAATTGCTTGCGATTCATGTGATATATGGTATCATGCGTTCTGTGTGGGATTTGATCCTGAAGGCACTTCTGAGGATTCATGGTTATGCCCAAGATGTGCAGTCGCTGGAATGCCAGGAAAATCTGTTGTGTCTGGTTTAGGAGATGGTAATAGTGAATGTTTGCTGGAAGATGGTTTTTCTAGAAAGCTGTCTGTATCTGTTGCTGATGCTGGCGAGACGGCTCTTGTTGTTTCGATGGTCGAAGGAAATCAATGGATGGAAGAATCAAGTGAGGACTTTTTATCAAACCTGGAAGACTGCAATGACTGGAAATTTGAATCTTATTTGATTTCTGATGCTAACTGTTTGGAGTCTCCAACACCATCTGCTGAGAGAGATAACATGCAACCAAACTTGGAAGCACAGGAACTTGAACTTTCTCTATCACGAGACACATCCTTCAGTTTACCTTCTAATTCATCAGTTCTTAATGATTTGAAGACAAACTCTGCCAATAAAATAGTGAATGAACCAAGTGGCTTTGATGGGTTAAGAATTTCTTCAACTAAATTGTTGGATGGATCTTGCTCTGAAAACAAACCATCTGAAAGTGAATCCAGTATAGGGCTTCATCTTGGTTTATCTGTGGGCTCCTTTTTGTCTGTTGAGAGCACGAAAGACAGAGGAACTGATGACGAGAACACAAAAGACACAGGAACTGATGAGGTCGTGGCTGCTGATGTGCACCAGCAACACCCTTCAGAAGAATCTCCATTATCAGGTATGGAAATGGGTGGTCCAAGACATGCTGGGAATGGGAAAGTTAAAGCTGAGATTGGAACTGAAGTTTCTGCAAAGAAAGTTAGAGCTGAAGGGAAGATTCAGATGGCTCCTATAGAGAAGCAAGCTAATGGACAACATGTTTCAGTTGATGCCCAAAAAGGTCACAGTACTGTTGAAGTTTCCACAGGAGATGAGTTAAGACATAATCGGAAAAGAAAGGAAGTCACCTCTGATATAATGAGTATAGTTCAGGGGACAGATCGTAGACCTCTGAAGGGGCTTGCTGAAAAATCCGATGGAGAGAGAGAAAATGCTACTGGCTTGAGAGTGAAAAAGATCATGAAGAGAGCTTCTGAGGACAAGGAATCAGCTGTGCTGGTTCAGAAGTTAAGAAAAGAAATAAGAGAAGCTGTACGAAGCAAATCCTCAATAGAGCTTGGGACAAATCTGTTTGATCCAAAACTTCTCACTGCCTTCAGGGCTGCCATAGCAGGACCCATAACTGAAACCACTGCCAGAAAGTTATCGCCTTCAGCTCTTAAGGTGAAGAAGTCAATGTTGCAGAAGGGAAAAATACGTGAGAATCTGACAAAGAAAATTTATGCAACATCCAAAGGAAAACGTAGGCGAGCATGGGACCGTGACCTTGAAGTCGAATTTTGGAAGCATCGTTGCATGAGAGCTACTAAACCTGAAAAGATTGAGACATTGAAGTCAGTTCTTGACCTCCTAAGAACTTCAGAGTGCATAGATCCAGAGCAAGGGTCTGAATCTCAGACCACAAATCCCATTCTTTCTCGGTTGTATCTGGCAGATACATCTGTTTTCCCACGAAAAGACGATATAAAGCCTTTGGCAGCTCTTAAAGCTAGTGGTAATCCTGAACAAAATAAAGAACATGCTTCAATGGAAAAAGTTTCTAAACCAGCTCTTCATAGTCCTGCTGTCAAAGCTCCAGAAACCTGTAAGATTCCATCAAAGGTTGGTTTTTCCCCCTATGATCATAAAGGGAATAAGAGTAATGCTTCAAGCTTAAAGGATGCTACTGCCCATGGTAAACCACATCCAGGAAAACGCCCAGAAGGGTCATCAATTCCTCTTTCTGTTGCTTCCAAGGTTAATTCCCAAAAGGAGGCAGGTGTTAAATCTGATGATATAAAGACTGATAAAAGGAAATGGGCCCTAGAGGTTCTTGCAAGAAAAAATGCCGCTGCTAGCAAGAATACGACACAGGAAAAACAGGAGGATAATGCCCTGCTTAAAGGAAATTACCCCTTACTAACTCAACTACCAAGAGATATGAGACCGGTATTGGCACCCAGTCAGCATAATAAAATCCCTGCATCAGTAAGGCAGACTCAGCTTTACCGCCTGACAGAGCACTTCTTGAGGAAAGCAAATCTCCCTGTCATTCGCAGAACAGCAGAGACAGAGCTAGCTGTTGCAGATGCTGTTAATATTGAAAGGGAGGTTGCCAATAGATCAAACAGCAAGCTAGTATATGTGAATCTATGTTCCCAGGAGCTATTACATCGTTCAGATGGCAGCAAATCTAGTAGAGCCTTGGAATCAGATTCAGATTGCAGCAAATCTAGTAGAGCCATTGAATCAGATCCCTTGCCTCCTGCTGAATCTACCGACAGATCAGAACCAACTACTAATGAACTTTCTACTGATCCTGAGATTGAAGAAGCTCTGAGAACTGCAGGCCTTTTGTCTGATTCCCCTCCCAACAGCCCACTTCAGGAAATTAAAGATCTTAATGATGAAGATGATCCCTCAAAGGACAACAGAGAGGAAGGACCTGATAATGTATTTGAAATGGATTCTCACCTGGAACTGGATATATATGGTGATTTTGAGTATGATTTGGAAGACGAAGAGTATATTGGTGCTACTGCTCTAAAGGCCTCTAAGGTACAGGAAGAAGGGGAGTCAAAAATGAAAGTGGTGTTCTCCACTCTAAACTCTGATAGATCAAACGATGTTCTGAATTTGGAAGAGCATGTGAAAGTGGGAATTGCTGAAGCACCAAAGAATTCTCCTTCCTCGCTCAAGCATCATACTGATACATGCATCAGAAGCTCAACCATGGAGGGTGGAACAGATCATTCATGTCTTCCTCCAGAATCCTTTCTTGGTGAAGGAGGAAAAGAGCCTTCTCTTGAAGAATGTGAAGAATTATACGGCCCAGACAAAGAACCGCTCATACAAAGGTTTCCAGAAAAGGCCACAGAGCTATATGGACTGTTTCATACTGAAGCTTTAGCCAAGAACACGGTTCCTGGAAAGAATGAAAACTATGGAGAAGATCAAGCAGTAAAAGGTGGAGAGAATTCACCCAATCCTTCTCAAACAGGTGAAAACGGCCGGAAGGAGAAATCTAACACTGACACCAATAAGCAGACTGATAGCAGCAGTTCTGTGCATGGGAAGGTGGAAGCCTATATCAAAGAGCACATCAGGCCCTTGTGCAAGAGTGGCGTGATCACAGTTGAGCAATATAGGTGGGCTGTGGGAAAAACAACTGAAAAAGTTATGAAATACCATGCCAAGGCCAAGAATGCTAATTTCCTAATCAAGGAAGGTGAAAAGGTGAAGAAACTTGCAGAGCAATATGTAGAGGCAGCACAGAAGTAA 3849 0.4232 MEVEVFTNDMAEDDSYEVDEDIDASGLEGEKCGICMDIIIDRGVLDCCQHWFCFACIDNWATITNLCPLCQTEFQLITCVPVYDTIGTSKVDEDSFPRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATITEDSNLDTSIACDSCDIWYHAFCVGFDPEGTSEDSWLCPRCAVAGMPGKSVVSGLGDGNSECLLEDGFSRKLSVSVADAGETALVVSMVEGNQWMEESSEDFLSNLEDCNDWKFESYLISDANCLESPTPSAERDNMQPNLEAQELELSLSRDTSFSLPSNSSVLNDLKTNSANKIVNEPSGFDGLRISSTKLLDGSCSENKPSESESSIGLHLGLSVGSFLSVESTKDRGTDDENTKDTGTDEVVAADVHQQHPSEESPLSGMEMGGPRHAGNGKVKAEIGTEVSAKKVRAEGKIQMAPIEKQANGQHVSVDAQKGHSTVEVSTGDELRHNRKRKEVTSDIMSIVQGTDRRPLKGLAEKSDGERENATGLRVKKIMKRASEDKESAVLVQKLRKEIREAVRSKSSIELGTNLFDPKLLTAFRAAIAGPITETTARKLSPSALKVKKSMLQKGKIRENLTKKIYATSKGKRRRAWDRDLEVEFWKHRCMRATKPEKIETLKSVLDLLRTSECIDPEQGSESQTTNPILSRLYLADTSVFPRKDDIKPLAALKASGNPEQNKEHASMEKVSKPALHSPAVKAPETCKIPSKVGFSPYDHKGNKSNASSLKDATAHGKPHPGKRPEGSSIPLSVASKVNSQKEAGVKSDDIKTDKRKWALEVLARKNAAASKNTTQEKQEDNALLKGNYPLLTQLPRDMRPVLAPSQHNKIPASVRQTQLYRLTEHFLRKANLPVIRRTAETELAVADAVNIEREVANRSNSKLVYVNLCSQELLHRSDGSKSSRALESDSDCSKSSRAIESDPLPPAESTDRSEPTTNELSTDPEIEEALRTAGLLSDSPPNSPLQEIKDLNDEDDPSKDNREEGPDNVFEMDSHLELDIYGDFEYDLEDEEYIGATALKASKVQEEGESKMKVVFSTLNSDRSNDVLNLEEHVKVGIAEAPKNSPSSLKHHTDTCIRSSTMEGGTDHSCLPPESFLGEGGKEPSLEECEELYGPDKEPLIQRFPEKATELYGLFHTEALAKNTVPGKNENYGEDQAVKGGENSPNPSQTGENGRKEKSNTDTNKQTDSSSSVHGKVEAYIKEHIRPLCKSGVITVEQYRWAVGKTTEKVMKYHAKAKNANFLIKEGEKVKKLAEQYVEAAQK* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0177 1282 Pfam Ring finger domain 31 71 IPR001841 -
Vvi2g0177 1282 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Vvi2g0177 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 108 IPR013083 -
Vvi2g0177 1282 Coils Coil 1269 1282 - -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 1164 1213 - -
Vvi2g0177 1282 ProSiteProfiles Zinc finger PHD-type profile. 64 184 IPR019787 -
Vvi2g0177 1282 Pfam PHD-finger 144 182 IPR019787 -
Vvi2g0177 1282 SMART ring_2 122 181 IPR001841 -
Vvi2g0177 1282 SMART ring_2 32 70 IPR001841 -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 1097 1121 - -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 367 385 - -
Vvi2g0177 1282 ProSiteProfiles Zinc finger RING-type profile. 32 71 IPR001841 -
Vvi2g0177 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 182 IPR013083 -
Vvi2g0177 1282 SMART PHD_3 130 182 IPR001965 -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 987 1010 - -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 916 935 - -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 693 789 - -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 365 415 - -
Vvi2g0177 1282 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Vvi2g0177 1282 PANTHER RING FINGER PROTEIN 41, 151 113 1277 - -
Vvi2g0177 1282 MobiDBLite consensus disorder prediction 915 1010 - -
Vvi2g0177 1282 SUPERFAMILY RING/U-box 23 77 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0177 26 74 C3H Transcription Factor Family AT2G39100 38.462 1.76e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi2g0177 PHD 3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0177 - - vvi:100254675 2533.44