Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0172 ATGGTGGAGAAGAGTTTGTGTTTTGAAGTATTCAGTGGGTCTTCTCCTAAAGGGGTTTCATCACCGGGCACTCAGTCACCAGAAGTTACATCCAAAGTTGCCGCCAGTGGCGATGAAGTTCATGAAAATTGTGCCAAAGTTGTTGAAGAAGCTGTTGCAGGCTGGGAAAAGGTTGAAAATAAGATGGTGGTTTTAAAGCAACAAATTGAGGCTGAAGTTCCAATTCAAAGCTACACCAATGTAGTAGATGCAAATCTTATAAGAAAGCCAAAAAGAAGTTGTCCTCGAACGACGCCGGCGGCAAGCCGCCGGCTGCGAAACGCCTCCACCATCACCACCTCACTGCCAACTCAGTTCAGCTGGGTATCAAACTCAGTTGCGGCATCCACTTCACTGCCGACTCAGTCCAGCTGGATTAATGATGCTCCTGCGCTTAAGAAGTCTGACATTGGTATTGTTGTTGCTGATGCAACTGGTGCAGCTCGTAGTGTTTCTGATATTGCCCTCACTGAATCTGGCCTTAGTGTTATCATCAGTGCTGTTTTGACCGATCGAGCAATCTTCTGA 567 0.4674 MVEKSLCFEVFSGSSPKGVSSPGTQSPEVTSKVAASGDEVHENCAKVVEEAVAGWEKVENKMVVLKQQIEAEVPIQSYTNVVDANLIRKPKRSCPRTTPAASRRLRNASTITTSLPTQFSWVSNSVAASTSLPTQSSWINDAPALKKSDIGIVVADATGAARSVSDIALTESGLSVIISAVLTDRAIF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0172 188 SUPERFAMILY HAD-like 139 181 IPR036412 -
Vvi2g0172 188 PRINTS P-type cation-transporting ATPase superfamily signature 158 170 - -
Vvi2g0172 188 PRINTS P-type cation-transporting ATPase superfamily signature 135 154 - -
Vvi2g0172 188 PRINTS H+-transporting ATPase (proton pump) signature 135 151 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0172 188 PRINTS H+-transporting ATPase (proton pump) signature 166 188 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi2g0172 188 PANTHER CALCIUM-TRANSPORTING ATPASE 139 188 - -
Vvi2g0172 188 Gene3D - 139 172 IPR023214 -
Vvi2g0172 188 Gene3D - 173 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0172 Vvi-Chr2 1547287 1548848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0172 139 188 Primary Pumps ATPases AT5G62670 84.000 6.11e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0172 K01535 - csin:114304476 82.0333