Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0154 ATGAAAGCCTTGGAAATTCTCTTCTCTTCCTTCCTGCTCTTCTTCTTCCTCAGACCTGCTGGAGCCTGCCAGAATCACTGCTCGCTCAACGGGCCAGAGGTCCACTTTCCTTTCTACATCAACGGCTCTTCCAGCTGTGGCTGTGGGTTCAGCCAGGGCTTTGGCCTCACCTGCAACAACAGCCAACCAGTCCTCAAGCTTCCATCGGCCGGAGATTTCATCGTCCAGTCAATAAGATACGACACACAAAGGATAAGGATCAAGGATCCAGACAATTGCATTCCGAAACGATTGCTGAACTTCAGCCTTTCGGATTCTCCATTCCAAGAAGCTCCACGTCGACAAAGGAACCTCAGGCTACTCAGCTGCAACATGGATAACTCGACTGAGTTCTCGGAGGAATTCGAGCTCTGGTCCAACGATTGCGTTAATGAAACCAACCACACGATTGTTGCCCTCGATGAATCGAGAAGTACGGAAGCTTCATTTTCTTATTATTTGCATAGTCAGTGCAAAGAAATTAAGACAGTTTTAGTTTCCGTTTCACGGTTTGGCTCTCTTGAGCTAAAATGGGATGAACCCAATTGCGGAGCTTGTGAACAAGAAGGAATAACTTGCGGATTCAAGAGGGGTACGGACTCTGAGATCGAATCCTCCAAGGCTAGCAGCCATGGTCTTCCAAGGAGTGCAAAGTACGGACTTATAATAGGCATTGGAATACCTGGGCTCTTATGCCTTATTGGGATTTCATGTTGCATCTGCGGCCGGATCCGGACTTATGCACGGCGACGCCACCGCTCGGATACCGACTTTGCAATCTCGATTGGGCCCCTGCCCGCCGTGGTTGTGATGGGCCTCGATGGGCCGACCATCGAATCTTACCCTAAAACAGTGCTGGGTGAGAGTATGCGCCTGCCCAAGCCCAGTGATGGCACTTGCCCAATCTGCCTGTCCGAGTACCAGCCCAAAGACACCATCAGGACCATCCCGGAATGCAACCATTGTTTCCATGTTGATTGCGTGGATGAATGGCTAAAGATGAACCCCACTTGCCCCGTCTGCAGGAATTCACCGGACGCATCATCGTTGGGGACACCGTGCTCATCGGTATCATCATCTGCAATACTATCATCATCGCCATCATCAACATCATTGTCATAG 1161 0.5022 MKALEILFSSFLLFFFLRPAGACQNHCSLNGPEVHFPFYINGSSSCGCGFSQGFGLTCNNSQPVLKLPSAGDFIVQSIRYDTQRIRIKDPDNCIPKRLLNFSLSDSPFQEAPRRQRNLRLLSCNMDNSTEFSEEFELWSNDCVNETNHTIVALDESRSTEASFSYYLHSQCKEIKTVLVSVSRFGSLELKWDEPNCGACEQEGITCGFKRGTDSEIESSKASSHGLPRSAKYGLIIGIGIPGLLCLIGISCCICGRIRTYARRRHRSDTDFAISIGPLPAVVVMGLDGPTIESYPKTVLGESMRLPKPSDGTCPICLSEYQPKDTIRTIPECNHCFHVDCVDEWLKMNPTCPVCRNSPDASSLGTPCSSVSSSAILSSSPSSTSLS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0154 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 358 IPR046948 -
Vvi2g0154 386 CDD RING-H2_EL5-like 313 355 - -
Vvi2g0154 386 ProSiteProfiles Zinc finger RING-type profile. 313 355 IPR001841 -
Vvi2g0154 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 360 IPR013083 -
Vvi2g0154 386 SUPERFAMILY RING/U-box 309 356 - -
Vvi2g0154 386 Pfam Ring finger domain 312 355 IPR001841 -
Vvi2g0154 386 Pfam Wall-associated receptor kinase galacturonan-binding 23 89 IPR025287 GO:0030247
Vvi2g0154 386 SMART ring_2 313 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0154 Vvi-Chr2 1379564 1382859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0154 27 358 C3H Transcription Factor Family AT2G25410 35.977 3.34e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0154 - - vvi:100244486 716.072