Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0150 ATGGACTCGGTAGAGACGATTAAGCCTAGGGTGGATCCTCAGCTGGGGGCAGATGCGTATGTGAAGAAGAGACGTACAGGAATCAAAGAAGAGGCCTCTTTCAGGTCTTCAAAGGGTGTCGAAGAAGAGTCCAAAATGGATGACGGTGCCGTGAAACTGAATTCGGAGCTTTCGACGTCGGGTTCTTCCGCGCCGGAGTCATCTGCGTCGCAGAGCGGTGGGGCATCGGATGGAGAAGTGGTCTCTGAGAGTGAGGAGCAGGGAGGAAAGGAAGGAGAGAAGCGTGTCTCGACGTGTGTCCCACATGGATCAATGTCGGTGATTGGGCGGAGGAGGGCCATGGAAGACGCCCTGACGGTGGCACCGGGAGAGTTCGACTCGTACGATTTCTACGCTGTGTACGACGGTCACGGCGGGGCTAAGGTGGCGTACGCGTGTCGTGATCGTCTGCACAGGTTACTCGCGAAAGAGATCGAGGATGCGATAAATGGCGAAGGACGAATAGATTGGGAGAACGTGATGGTGGCGAGCTTTTCAAAGATGGATGAAGAGATTAATGGCGAAGCCAATCAGGTGGAAGACAGGTCCACTTCTTCCTTGCTCAGGTCGATGGGGTCGACGGCGGTGGTGGTGGTGGTTGGCCCCGAGAAGCTTGTGGTGGCTAATTGCGGCGATTCTAGAGCCGTTCTCTGCCGCCGCGGCGTTGCCGTCCCACTGTCTCGTGATCATAAGCCTGACAGGCCTGATGAAAGGGAGAGAGTGGAAGCAGCAGGAGGGAAAGTGATAAATTGGAATGGTTTTCGTATTCTAGGAGTGCTTTCTACCTCACGATCAATAGGGGATTACTTTCTGAAGCCATATGTGACCCCCAAACCAGAGGTCACAGTTTGGGAGCGAGAAGAGTTTGATGACTTCATTGTAATAGCAAGCGATGGTTTATGGGATGTTATTACAAATGAGCTTGCCTGCAAGATTGTGAGGAAATGCTTTGACGGCCAAATTAGGAGGAGAGTCTCGGAGGGAATGAGTAGAAGTTGTGCAGCAAAGGCTGCAGCAATGCTAACTGAACTGGCAATGGCTCAAGGAAGCAAAGACAATATCAGCGTAGTGGTGGTGGAGCTTAAGAAACATTTGTGCTATGGGGGCCTCAAGCTGAAGAATCCAAACAGCCCAAGCCATTGA 1182 0.5237 MDSVETIKPRVDPQLGADAYVKKRRTGIKEEASFRSSKGVEEESKMDDGAVKLNSELSTSGSSAPESSASQSGGASDGEVVSESEEQGGKEGEKRVSTCVPHGSMSVIGRRRAMEDALTVAPGEFDSYDFYAVYDGHGGAKVAYACRDRLHRLLAKEIEDAINGEGRIDWENVMVASFSKMDEEINGEANQVEDRSTSSLLRSMGSTAVVVVVGPEKLVVANCGDSRAVLCRRGVAVPLSRDHKPDRPDERERVEAAGGKVINWNGFRILGVLSTSRSIGDYFLKPYVTPKPEVTVWEREEFDDFIVIASDGLWDVITNELACKIVRKCFDGQIRRRVSEGMSRSCAAKAAAMLTELAMAQGSKDNISVVVVELKKHLCYGGLKLKNPNSPSH* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0150 393 SMART PP2C_SIG_2 111 374 IPR001932 -
Vvi2g0150 393 ProSiteProfiles PPM-type phosphatase domain profile. 101 374 IPR001932 -
Vvi2g0150 393 SMART PP2C_4 87 372 IPR001932 -
Vvi2g0150 393 FunFam Protein phosphatase 2C 51 94 380 - -
Vvi2g0150 393 PANTHER PROTEIN PHOSPHATASE 72 374 IPR015655 GO:0004722|GO:0006470
Vvi2g0150 393 CDD PP2Cc 102 374 IPR001932 -
Vvi2g0150 393 MobiDBLite consensus disorder prediction 30 103 - -
Vvi2g0150 393 Pfam Protein phosphatase 2C 104 367 IPR001932 -
Vvi2g0150 393 MobiDBLite consensus disorder prediction 53 78 - -
Vvi2g0150 393 MobiDBLite consensus disorder prediction 83 97 - -
Vvi2g0150 393 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Vvi2g0150 393 SUPERFAMILY PP2C-like 98 375 IPR036457 -
Vvi2g0150 393 Gene3D - 94 378 IPR036457 -
Vvi2g0150 393 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0150 Vvi-Chr2 1336617 1338192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0150 102 376 PP2C-type Phosphatase Gene Family AT2G29380 48.443 6.85e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0150 K14497 - vvi:100251367 712.605