Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0142 ATGTTGTCGAGAGCCTTCTCGAAGCCCAGGTGGAGCCCCAAGAATGGAGAGTTGAGCCACAAATATTCGTCAATGGTGCTGGATCAGTGCGATATCGTGGGATTGATGGAGGGCATGCCATTGTCGTTCTGCGACCACGACCACCGCCGCGACCGCAGTGGCACGTGCATGAAGTGCCCGGCGAAGCCGACTCTGAGAGACGTGCTGAGTTCATCGGTGGGGGTGATGGGGGAGAGTCCTCTGGCGATGACGGAGAAGGTGGTGATGTATCGTGGGAAAAGGGTTTATGCGGTGAAGAGGTTTAGGAAAGTGAGCTTAGGGAAGATGGAGTTTGGGAGGAGAGTGGAGAGAGTGGCCGGCATGAGTAGGAGGTGCGAGTATCTCGTCCCTTTAACGGCTTATTTGTATGCCAAGAGGATGAAGTTTGTCCTCACTGACTATTATCCCATGGGCAGCCTCGCTGACTTGCTCGCCGGTGGAAGAGCCCTCGGCCACACCGCCCTGGATTGGAACCAACGCCTCCAAATAATCCTCCACATCGCCCGAGCCATTGCTTTCATCCATTCCCAGTCTCCTCCCGTCTCCCATGACACCAACAAATACATGCAGATGAACGTGCATGGCAACGTCAAATCCTCCAATGTCATGATCAACGTCGACTTCTCCGCCCGCTTGTCGGACTACGGCTTCGTCCAATTGGTCGACCCTGTCGAAGACTGCGACACCTGGCAGATGAAGCCGCCGCCTCCGCCGCCCTCGCCCTCTTCGTCATCGCCGTCGGAGAGTTTCTTCTCCGAGAAGCTGTGCCAGAAGAGCGATGTGTACAATTTTGGAATAATAATTTTGGACACCCTTGGAGGACCTAGGGCAGTGGGCTTGAAGCGCTGCATATTGGAGAATAAAGAAGCGATAAGAGATAGGAAAGCGGACTTTTTCGAGTTCAGTGTGAGGGGGAAGGAGAAGAAGCAAGCTTTCAATGTTTTGGAAATTGGTTTAGCCTGTTTGGATAGCACACCAGAGGCAAGGCCTTCAATAGAACAGATACTTCATAATATCTTGGAGGTTTCTGAAAAAGCATGA 1080 0.5278 MLSRAFSKPRWSPKNGELSHKYSSMVLDQCDIVGLMEGMPLSFCDHDHRRDRSGTCMKCPAKPTLRDVLSSSVGVMGESPLAMTEKVVMYRGKRVYAVKRFRKVSLGKMEFGRRVERVAGMSRRCEYLVPLTAYLYAKRMKFVLTDYYPMGSLADLLAGGRALGHTALDWNQRLQIILHIARAIAFIHSQSPPVSHDTNKYMQMNVHGNVKSSNVMINVDFSARLSDYGFVQLVDPVEDCDTWQMKPPPPPPSPSSSSPSESFFSEKLCQKSDVYNFGIIILDTLGGPRAVGLKRCILENKEAIRDRKADFFEFSVRGKEKKQAFNVLEIGLACLDSTPEARPSIEQILHNILEVSEKA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0142 359 SUPERFAMILY Protein kinase-like (PK-like) 75 352 IPR011009 -
Vvi2g0142 359 Gene3D Transferase(Phosphotransferase) domain 1 62 358 - -
Vvi2g0142 359 Pfam Protein kinase domain 83 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0142 359 MobiDBLite consensus disorder prediction 241 262 - -
Vvi2g0142 359 MobiDBLite consensus disorder prediction 243 257 - -
Vvi2g0142 359 ProSiteProfiles Protein kinase domain profile. 65 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0142 359 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 31 356 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0142 Vvi-Chr2 1244909 1246172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0142 59 355 Receptor kinase-like Gene Family AT5G58300 30.476 2.64e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi2g0142 Pkinase 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0142 - - vvi:100852610 689.878