Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0139 ATGGACACTGGTTTGAAATGGCAGCAGAAGACTCTGGTCAATGAGCTTACTCAAGGGATGGAGCTGGCAAAGCAGTTGAAGATCCATTTGAGTCCATCTTCAATGAGCCAGACCCAAGAATTCTTGGTACATAAGATAGTAGCATCATTTGAGAAGGCTCTTTTGATAGTCAAATGGAGTGGGCCAGTGGAAAACCCTCAGCCAGTGGCACCTTCATCTGCTCCCCAGTCTCCCCTTTCTGTCAATGGAAGTCCCCGGACTGTGAGCGAGGATTTTGACAAGGGTTGTAAGGATCATCATCAGGAACACAAAGATTTCTCAAAGAAGAGAAAGACATTGCCCACATGGACCGATCAAGTGAGAGTCTGCTCTGAGACCGGGCTTGAAGGGCCCCATGATGATGGCTACAACTGGAGAAAATATGGGCAGAAGGACATTCTTGGAGCTAAATACCCCAGAAGCTACTACAGATGCACCTACAGAAACCTCCACGACTGTTGGGCAACAAAGCAAGTTCAGCGTTCGGATGAAGATCCCTCCATGTTCGAGATCACATACCGAGGAAAGCATACTTGCACCCAAGGCAGTCATTCAGTGCCAGCACCAGCATCACCTGAAAAGCAAGAGATAAAACAGAACCACCATAACGACAATAACCATCAGCAACAGCATTACATAGAGAACCCCTTGAACTATTCCTCCATGGCTTCAACATCTTACGGATGCATGAAGAGTGAAACCAGCCTGTTCCCACAGCCTTCAGCTTTCAACAAGGACAACTATGACAACCTCTTGGGCTGTTATTCTCCCACATTTATATCCCCAGCGACGTCCGATTCAAACTGCTTCTCACTGTCTCCATGCCAGATGAGCAACTTTGGAGGGCCTCCCAATCTTCAACATTCAGAATCTGAGCTCACTGAAATTATCTCAGCAGCCAATTCTCCAATTCTGAACTTGGAGTTTCCCCTTGATCAAGTGGACTTTGATCCCAGTTTCCCATTTAATACCCCAGGATTTTTCTCCTAG 1029 0.4674 MDTGLKWQQKTLVNELTQGMELAKQLKIHLSPSSMSQTQEFLVHKIVASFEKALLIVKWSGPVENPQPVAPSSAPQSPLSVNGSPRTVSEDFDKGCKDHHQEHKDFSKKRKTLPTWTDQVRVCSETGLEGPHDDGYNWRKYGQKDILGAKYPRSYYRCTYRNLHDCWATKQVQRSDEDPSMFEITYRGKHTCTQGSHSVPAPASPEKQEIKQNHHNDNNHQQQHYIENPLNYSSMASTSYGCMKSETSLFPQPSAFNKDNYDNLLGCYSPTFISPATSDSNCFSLSPCQMSNFGGPPNLQHSESELTEIISAANSPILNLEFPLDQVDFDPSFPFNTPGFFS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0139 342 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0139 342 MobiDBLite consensus disorder prediction 90 107 - -
Vvi2g0139 342 MobiDBLite consensus disorder prediction 67 107 - -
Vvi2g0139 342 FunFam WRKY transcription factor 53 118 195 - -
Vvi2g0139 342 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0139 342 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g0139 342 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 239 IPR044810 GO:0003700
Vvi2g0139 342 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g0139 342 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0139 Vvi-Chr2 1228314 1229662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0139 5 209 WRKY Transcription Factor Family AT4G23810 49.565 1.31e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi2g0139 WRKY 2.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0139 - - vvi:100253577 707.983