Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0132 ATGGCTGAGACTGTTATTGAAATCCCCATGGCTGTTCCGATAAAGAAGGCAAGGACCAGCAGGAAGGCGCTGAAGGAGAAGAGCTCTTCAACGAATAAGGCAAACATCTTGGCCGGACAGATCTCAGAGTCCTCTCCGGCGCCAGTTCCGACGCCGTCTGAGGACGCCGGAAAGGAGAACCACGAGAGCCTGTCACAGCCTCTGTCCGGGAAGAAGAAGAGTAAAGGGGCTCAGAAAGGGAAGAAATCGAAGGAGTCCCAGTCGTTTGAGAGGGACTTGCAAGAAATGCAGGAAAAGCTTGAGCAATTGCGGCTTGAGAAGGAGAAGACGGAGGAGTTATTGAAGGCTAGAGACGAGATGTTGAAGATCAAGGAGGAAGAGCTCGAGACAAGGGGTCGAGAGCAGGAGAAGCTTCAGATGGAGTTGAAGAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCGTGACATTTCCACTTCACTCTCTGAGAGATAAAGAACAAGAAAAGAAGGAGAAGAACAAAAAGGGCTGCCCAGAAACGAAAAGGCCATCTCCGTCATATGTACTCTGGTGCAAGGATCAGTGGAATGAGGCCAAGAAAGCAAACCCCGATGCAGACTTCAAGGAGATCTCAAATATTTTGGGGGCTAAATGGAAGACAATCAGCGCAGAAGAGAAGAAGCCATATGAGGAGAAGTATCAGGCTGAGAAGGAAGCCTATTTGCAGATAGTGGGGAAGGAGAAGCGCGAAAATGAAGCCATGAGGCTGTTGGAAGAGGAGCAGAAGCAGAAGACAGCTATGGAGTTGCTTGAGCAATATCTCCAGTTCAAACAGGGAGCAGAAAAGGAGAACAAGAAGAAAAAGAAAGAGAAGGACCCATTGAAACCGAAGCATCCTGTATCAGCATTTTTTTTGTTCTCAAAGGAAAGGCGAGCAGCTCTGCTTGGAGAGGATAAGAATGTTTTAGAGATTGCCAAGATTGCTGGTGAAGAGTGGAAGAACATGACGGAGAAGCAGAAACGCCCTTACGAAGAGATTGCAAAGAAAAATAAGGCAAAGTATCAGGAAGAAATGGAGTTGTACAAACAGCAGAAGGATGAAGAAGCTGAAGATCTCAAGAAGGGAGAGGAGGAGCAGATGAAAATCCAGAAACATGAAGCATTACAACTGCTCAAGAAGAAAGAAAAAACCGAAAATATAATCAAGAAAACCAAGGAGAATCGCCAGAAGAAGAAGAAGCAGAAGGAAAAGGCCAACTCTGATCCAAACAAGCCTAAGAAGCCGGCATCCTCATTCCTCCTATTCAGCAAAGAAGCAAGGAATAGTTTCCTGCAAGAGCGACCAGGAATAAACAATTCCACCCTCAATGCTCTGATTTCAGTGAAATGGAAGGAGTTGGATGAGGAAGAGAGGAAAATCTGGAATGACAAAGCTAAGGAAGCTATGGAAGCATACCAGAAGGAACTAGAGGAATATAACAAGTCTGCTGCAACCATATCTGACAAGCCACAGCAATGA 1518 0.4592 MAETVIEIPMAVPIKKARTSRKALKEKSSSTNKANILAGQISESSPAPVPTPSEDAGKENHESLSQPLSGKKKSKGAQKGKKSKESQSFERDLQEMQEKLEQLRLEKEKTEELLKARDEMLKIKEEELETRGREQEKLQMELKKLQKLKEFKPTVTFPLHSLRDKEQEKKEKNKKGCPETKRPSPSYVLWCKDQWNEAKKANPDADFKEISNILGAKWKTISAEEKKPYEEKYQAEKEAYLQIVGKEKRENEAMRLLEEEQKQKTAMELLEQYLQFKQGAEKENKKKKKEKDPLKPKHPVSAFFLFSKERRAALLGEDKNVLEIAKIAGEEWKNMTEKQKRPYEEIAKKNKAKYQEEMELYKQQKDEEAEDLKKGEEEQMKIQKHEALQLLKKKEKTENIIKKTKENRQKKKKQKEKANSDPNKPKKPASSFLLFSKEARNSFLQERPGINNSTLNALISVKWKELDEEERKIWNDKAKEAMEAYQKELEEYNKSAATISDKPQQ* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0132 505 Coils Coil 128 148 - -
Vvi2g0132 505 MobiDBLite consensus disorder prediction 80 95 - -
Vvi2g0132 505 MobiDBLite consensus disorder prediction 156 184 - -
Vvi2g0132 505 SUPERFAMILY HMG-box 169 242 IPR036910 -
Vvi2g0132 505 Coils Coil 344 378 - -
Vvi2g0132 505 MobiDBLite consensus disorder prediction 29 49 - -
Vvi2g0132 505 SMART hmgende2 424 494 IPR009071 -
Vvi2g0132 505 SMART hmgende2 295 363 IPR009071 -
Vvi2g0132 505 SMART hmgende2 179 249 IPR009071 -
Vvi2g0132 505 Coils Coil 387 421 - -
Vvi2g0132 505 Pfam HMG (high mobility group) box 425 493 IPR009071 -
Vvi2g0132 505 Pfam HMG (high mobility group) box 296 362 IPR009071 -
Vvi2g0132 505 Pfam HMG (high mobility group) box 180 241 IPR009071 -
Vvi2g0132 505 Coils Coil 270 290 - -
Vvi2g0132 505 MobiDBLite consensus disorder prediction 362 405 - -
Vvi2g0132 505 Gene3D High mobility group box domain 405 502 IPR036910 -
Vvi2g0132 505 Gene3D High mobility group box domain 279 375 IPR036910 -
Vvi2g0132 505 MobiDBLite consensus disorder prediction 362 434 - -
Vvi2g0132 505 SUPERFAMILY HMG-box 283 367 IPR036910 -
Vvi2g0132 505 MobiDBLite consensus disorder prediction 159 179 - -
Vvi2g0132 505 Gene3D High mobility group box domain 163 245 IPR036910 -
Vvi2g0132 505 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 425 493 IPR009071 -
Vvi2g0132 505 SUPERFAMILY HMG-box 417 495 IPR036910 -
Vvi2g0132 505 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 296 362 IPR009071 -
Vvi2g0132 505 Coils Coil 79 126 - -
Vvi2g0132 505 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 501 IPR044601 GO:0003677
Vvi2g0132 505 MobiDBLite consensus disorder prediction 1 95 - -
Vvi2g0132 505 CDD HMG-box_AtHMGB6-like_rpt1 181 248 - -
Vvi2g0132 505 Coils Coil 475 502 - -
Vvi2g0132 505 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 180 248 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi2g0132 HMG_box 1.5e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0132 K09273 - vvi:100243346 822.772