Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0115 ATGTTGTCCCCAATCAAGTACAGCGAGCACCGCAAGCGTACTAAGCTGCTGACAACCTCGTCGGAGAAATTCACCGGCAGGAGTATGAATGCTGATGGGCCCAGAATTGTACGGATTTCCGTCACTGACGGTGACGCGACGGACTCTTCCAGCGACGAAGAGGGTGAGCTTTTCGCGCGTCAGCGTGTGAAGAAGTTCGTTAACGAGATCACTATTCAGTCATGTTCAGGAGAGAACAGCGACGGCACCACTGTTTGGAGAAGCAGATCGGCGAGAAATGGCAGGAAGAAGTCCACCGGAAAAGGTGAAGCTCAGGCTGTCCGGCAGCTGGCGAAGCCGTCGACGGGTAAAAAGTTTCGCGGCGTTCGGCAACGTCCTTGGGGGAAATGGGCGGCTGAAATCAGAGATCCTCTGCGACGTGTACGGCTGTGGTTAGGTACCTATGATACGGCGGAGGAGGCCGCCATGGTGTACGACAACGCAGCGATTCAGCTGCGTGGACCCGACGCGCTCACCAACTTCGCTTCACCCCCCGCGGTGACCAAGCCAAAAATAGAGCCGGTGACGGTGACGTGCTCCAGCTCCGGCGAAGAGTCTCACAACAATCTCTGCTCTCCGACCTCGGTTCTCCGATATATCAACGAAGAAGCCGAGTCACAAGGACCCATCCCCGAAACCCCGAAACAAACCCGAAGCACTGAACTACCCCGAATTATCGGAAACGACACAGGCGTATCGGATAACTTTTTGGATGTTTCGGAATTTGACACACTATTTGTTAACGATGCCTTCGATTTCCAAAGTTCAGTACCAGAGTTTTTCGGCGAGACGAATCTTCTAGACAGCATATTGAGAGAAGACTGCAGCGATATCTTCCTTAAATCGAGTGAAGATTTCGGATTCAGATTCCCGACGAGTCCCGTTGATGAGTATTTTCAAGACATCGGCGATTTATTCGTCTCCGACCCTCTCGTCGCGCTTTAA 984 0.5274 MLSPIKYSEHRKRTKLLTTSSEKFTGRSMNADGPRIVRISVTDGDATDSSSDEEGELFARQRVKKFVNEITIQSCSGENSDGTTVWRSRSARNGRKKSTGKGEAQAVRQLAKPSTGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFASPPAVTKPKIEPVTVTCSSSGEESHNNLCSPTSVLRYINEEAESQGPIPETPKQTRSTELPRIIGNDTGVSDNFLDVSEFDTLFVNDAFDFQSSVPEFFGETNLLDSILREDCSDIFLKSSEDFGFRFPTSPVDEYFQDIGDLFVSDPLVAL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0115 327 SUPERFAMILY DNA-binding domain 118 175 IPR016177 GO:0003677
Vvi2g0115 327 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Vvi2g0115 327 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 225 - -
Vvi2g0115 327 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Vvi2g0115 327 FunFam Ethylene-responsive transcription factor 2 117 176 - -
Vvi2g0115 327 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Vvi2g0115 327 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vvi2g0115 327 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Vvi2g0115 327 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Vvi2g0115 327 MobiDBLite consensus disorder prediction 78 104 - -
Vvi2g0115 327 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0115 Vvi-Chr2 1042730 1043713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0115 1 327 AP2-EREBP Transcription Factor Family AT4G23750 43.662 1.81e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi2g0115 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0115 - - vvi:100263984 656.751