Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0113 ATGAAAACTCTATACATTTTCTCTGGGATTTTCTTGCTGGGTTTGATATTCTCTCTAGGGAATGCAGATCCTGTTGATGATAAGCAAGCCTTACTTGAATTTGTGAGCCATCTTCCTCACCTGCACCCTATCAATTGGGATAAAGACTCTCCTGTGTGTAATAACTGGACTGGAGTGACTTGTAGTGATGATAAGTCCCAAGTTATAAGTGTTCGGTTGCCTGGAGTTGGATTTCAGGGTGCAATTCCACCCAACACTCTTAGTCGCCTCTCAGCACTGCAGATATTGAGTCTTAGATCCAATCGAATATCCGGGTTCTTCCCTTCTGATTTTGTCAACCTCAAAAATTTAACTTTTTTATATCTTCAATATAATGACTTTGTTGGGTCATTGCCATCTGATTTCTCAGTTTGGAAGAATCTTACCATTATTAATTTATCCAACAACCGCTTCAATGGTAGTATTCCCAATTCAATATCCAATCTGACTAGCCTTCAGGCTTTGAATCTTGCTACCAATTCACTTTCTGGTGAAATTCCTGATCTTCAATTATCCAGTTTGCAGCAACTAAATTTATCCCACAATAATCTCAGTGGCAGCATGCCTAAATCACTTCTGAGGTTTCCGCCATCGGTTTTCAGCGGTAACAACATTACTTTTGAAACCTCTCCCCTTCCTCCTGCTCTTTCACCCTCCTTTCCCCCTTATCCAAAACCTAGGAATTCTAGAAAGATTGGGGAGATGGCATTACTGGGAATCATTGTTGCTGCTTGTGCTCTGGGGCTTGTGGCTTTTGCTTTCCTGCTGATAGTTTGTTGCTCAAAAAGAAAAGGAGGTGATGGGTTTTCAGGGAAGTTGCAAAAGGGTGGAATGTCACCAGAGAAAGGAATTCCAGGGAGTCAAGATGCGAATAATAGACTGATTTTCTTTGACGGCTGTAACTTTGTATTTGATTTAGAGGATTTATTGAGGGCTTCTGCTGAGGTATTGGGAAAGGGTACATTCGGCACAACTTATAAGGCAATTCTTGAGGATGCTACCACAGTTGTGGTCAAGAGGTTGAAGGAGGTTAGTGTTGGGAAGCGGGAGTTTGAGCAACAGATGGAGGTTGTTGGGAATATTAGGCATGAGAATGTGGTTGAACTAAGGGCATATTACCATTCCAAGGATGAGAAGTTAATGGTGTATGATTATTACAGTTTGGGGAGTGTTTCTACAATATTACATGGTAAAAGAGGAGGCGATAGGATGCCTTTAGATTGGGATACAAGATTGAGGATAGCCCTAGGTGCAGCAAGAGGAATTGCTCGTATCCATGCAGAGAATGGTGGGAAGTTTGTCCATGGCAACATAAAGTCCTCAAACATCTTCCTCAATGCTCGAGGATATGGGTGTGTCTCAGATCTTGGTCTAACAACAGTAATGAGCCCACTTGCTCCACCAATCTCCCGTGCTGCTGGTTACCGAGCCCCAGAAGTGACTGATACCCGGAAAGCTTCACAATCTTCTGATGTCTACAGTTTTGGAGTAGTGCTGCTGGAACTCCTCACTGGCAAGTCCCCTATCCATGCCACCGGCGGTGATGAGGTTATCCACTTGGTCAGGTGGGTTCATTCTGTAGTTCGAGAAGAGTGGACAGCAGAAGTCTTTGATGTAGAGCTGATGAGGTATCCAAACATAGAGGAAGAGATGGTTGAGATGTTACAAATAGCAATGGGGTGTGTGATTCGGATGCCAGACCAAAGACCTAAAATGCCAGATGTAGTGAGACTAATAGAAAATGTCCGGCATACTGATACTGACAATCGGTCATCTTTCGAAACCCGGTCTGAAGGCTCAACACCATTGCCAACCACGGTTGGAACATATTCCTCTCCCTCACAGTGA 1887 0.4346 MKTLYIFSGIFLLGLIFSLGNADPVDDKQALLEFVSHLPHLHPINWDKDSPVCNNWTGVTCSDDKSQVISVRLPGVGFQGAIPPNTLSRLSALQILSLRSNRISGFFPSDFVNLKNLTFLYLQYNDFVGSLPSDFSVWKNLTIINLSNNRFNGSIPNSISNLTSLQALNLATNSLSGEIPDLQLSSLQQLNLSHNNLSGSMPKSLLRFPPSVFSGNNITFETSPLPPALSPSFPPYPKPRNSRKIGEMALLGIIVAACALGLVAFAFLLIVCCSKRKGGDGFSGKLQKGGMSPEKGIPGSQDANNRLIFFDGCNFVFDLEDLLRASAEVLGKGTFGTTYKAILEDATTVVVKRLKEVSVGKREFEQQMEVVGNIRHENVVELRAYYHSKDEKLMVYDYYSLGSVSTILHGKRGGDRMPLDWDTRLRIALGAARGIARIHAENGGKFVHGNIKSSNIFLNARGYGCVSDLGLTTVMSPLAPPISRAAGYRAPEVTDTRKASQSSDVYSFGVVLLELLTGKSPIHATGGDEVIHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIAMGCVIRMPDQRPKMPDVVRLIENVRHTDTDNRSSFETRSEGSTPLPTTVGTYSSPSQ* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0113 628 Gene3D Ribonuclease Inhibitor 25 231 IPR032675 -
Vvi2g0113 628 PANTHER OS05G0588300 PROTEIN 9 603 - -
Vvi2g0113 628 SUPERFAMILY Protein kinase-like (PK-like) 328 592 IPR011009 -
Vvi2g0113 628 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 606 - -
Vvi2g0113 628 SUPERFAMILY L domain-like 37 208 - -
Vvi2g0113 628 MobiDBLite consensus disorder prediction 607 628 - -
Vvi2g0113 628 ProSitePatterns Protein kinases ATP-binding region signature. 330 361 IPR017441 GO:0005524
Vvi2g0113 628 ProSiteProfiles Protein kinase domain profile. 324 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0113 628 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Vvi2g0113 628 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vvi2g0113 628 FunFam pollen receptor-like kinase 1 294 398 - -
Vvi2g0113 628 ProSiteProfiles Leucine-rich repeat profile. 186 207 IPR001611 GO:0005515
Vvi2g0113 628 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vvi2g0113 628 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Vvi2g0113 628 Gene3D Transferase(Phosphotransferase) domain 1 400 613 - -
Vvi2g0113 628 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g0113 628 Gene3D Phosphorylase Kinase; domain 1 299 398 - -
Vvi2g0113 628 MobiDBLite consensus disorder prediction 600 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0113 Vvi-Chr2 1010834 1014613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0113 20 611 Receptor kinase-like Gene Family AT4G23740 65.574 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi2g0113 Pkinase 2.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0113 - - vvi:100258609 1193.33